RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 VCX2Q9H322 139 aa12.42□□□□□ -0.42
SPIDR-227ENST00000541342 C2CD3Q4AC94 2353 aa12.42□□□□□ -0.42
SPIDR-227ENST00000541342 IGHV3-73A0A0B4J1V6 119 aa12.42□□□□□ -0.42
SPIDR-227ENST00000541342 IGHV3-30-3P0DP02 117 aa12.41□□□□□ -0.42
SPIDR-227ENST00000541342 H7C2G1 150 aa12.4□□□□□ -0.42
SPIDR-227ENST00000541342 SLC25A20O43772 301 aa12.4□□□□□ -0.42
SPIDR-227ENST00000541342 SPXQ9BT56 116 aa12.4□□□□□ -0.42
SPIDR-227ENST00000541342 TRAV8-3A0A0A6YYJ7 113 aa12.39□□□□□ -0.43
SPIDR-227ENST00000541342 C9JAW5 83 aa12.39□□□□□ -0.43
SPIDR-227ENST00000541342 MRPS36P82909 103 aaKnown RBP12.39□□□□□ -0.43
SPIDR-227ENST00000541342 RNASE13Q5GAN3 156 aaKnown RBP12.39□□□□□ -0.43
SPIDR-227ENST00000541342 EDA2RQ9HAV5 297 aa12.39□□□□□ -0.43
SPIDR-227ENST00000541342 HTN1P15515 57 aa12.39□□□□□ -0.43
SPIDR-227ENST00000541342 ERG28Q9UKR5 140 aa12.39□□□□□ -0.43
SPIDR-227ENST00000541342 PYGO1Q9Y3Y4 419 aa12.39□□□□□ -0.43
SPIDR-227ENST00000541342 TENM1Q9UKZ4 2725 aa12.39□□□□□ -0.43
SPIDR-227ENST00000541342 IGLV1-51P01701 117 aa12.38□□□□□ -0.43
SPIDR-227ENST00000541342 Q6ZSN1 163 aa12.38□□□□□ -0.43
SPIDR-227ENST00000541342 VWFP04275 2813 aa12.38□□□□□ -0.43
SPIDR-227ENST00000541342 TRGV11A0A075B6L2 103 aa12.38□□□□□ -0.43
SPIDR-227ENST00000541342 ADAMTSL4-AS1Q5T5F5 129 aa12.38□□□□□ -0.43
SPIDR-227ENST00000541342 CRLF1O75462 422 aa12.37□□□□□ -0.43
SPIDR-227ENST00000541342 M0QXV9 152 aa12.37□□□□□ -0.43
SPIDR-227ENST00000541342 CLUHP3Q96NS8 147 aa12.37□□□□□ -0.43
SPIDR-227ENST00000541342 TIMM21Q9BVV7 248 aa12.37□□□□□ -0.43
SPIDR-227ENST00000541342 JMJD1CQ15652 2540 aa12.37□□□□□ -0.43
SPIDR-227ENST00000541342 A8MZ25 164 aa12.36□□□□□ -0.43
SPIDR-227ENST00000541342 STHQ8IWL8 128 aa12.36□□□□□ -0.43
SPIDR-227ENST00000541342 FLNBO75369 2602 aaKnown RBP12.35□□□□□ -0.43
SPIDR-227ENST00000541342 TRIAP1O43715 76 aa12.35□□□□□ -0.43
SPIDR-227ENST00000541342 CHCHD7Q9BUK0 85 aa12.35□□□□□ -0.43
SPIDR-227ENST00000541342 GEMIN7Q9H840 131 aaKnown RBP12.35□□□□□ -0.43
SPIDR-227ENST00000541342 WFDC10AQ9H1F0 79 aa12.34□□□□□ -0.43
SPIDR-227ENST00000541342 XCL2Q9UBD3 114 aa12.34□□□□□ -0.43
SPIDR-227ENST00000541342 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.34□□□□□ -0.43
SPIDR-227ENST00000541342 INSP01308 110 aa12.34□□□□□ -0.43
SPIDR-227ENST00000541342 IGHV1-58A0A0C4DH39 117 aa12.33□□□□□ -0.44
SPIDR-227ENST00000541342 LINC00482Q8N8I6 264 aa12.33□□□□□ -0.44
SPIDR-227ENST00000541342 C19orf73Q9NVV2 129 aa12.33□□□□□ -0.44
SPIDR-227ENST00000541342 BEAN1Q3B7T3 259 aa12.33□□□□□ -0.44
SPIDR-227ENST00000541342 LINC01587Q99440 93 aa12.33□□□□□ -0.44
SPIDR-227ENST00000541342 UBE2D4Q9Y2X8 147 aa12.33□□□□□ -0.44
SPIDR-227ENST00000541342 LINC01620Q4KN68 170 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 TRBV30A0A0K0K1B3 111 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 Q1RN00 199 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 VSIG2Q96IQ7 327 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 TRAV26-1A0A087WT03 109 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 PF4P02776 101 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 C11orf72Q8NBR9 251 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 LINC00467Q9BRT7 94 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 NDUFA12Q9UI09 145 aa12.32□□□□□ -0.44
SPIDR-227ENST00000541342 SPATA3Q8NHX4 192 aa12.31□□□□□ -0.44
SPIDR-227ENST00000541342 LINC01600Q96MT4 127 aa12.31□□□□□ -0.44
SPIDR-227ENST00000541342 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.31□□□□□ -0.44
SPIDR-227ENST00000541342 IGKV2-29A2NJV5 120 aaPredicted RBP12.31□□□□□ -0.44
SPIDR-227ENST00000541342 C1orf158Q8N1D5 194 aa12.31□□□□□ -0.44
SPIDR-227ENST00000541342 ATXN8Q156A1 80 aa12.31□□□□□ -0.44
SPIDR-227ENST00000541342 NTN5Q8WTR8 489 aaPredicted RBP12.31□□□□□ -0.44
SPIDR-227ENST00000541342 SPANXDQ9BXN6 97 aa12.31□□□□□ -0.44
SPIDR-227ENST00000541342 SPANXCQ9NY87 97 aa12.31□□□□□ -0.44
SPIDR-227ENST00000541342 TNFRSF18Q9Y5U5 241 aa12.31□□□□□ -0.44
SPIDR-227ENST00000541342 TINCRA0A1B0GVN0 87 aa12.3□□□□□ -0.44
SPIDR-227ENST00000541342 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.3□□□□□ -0.44
SPIDR-227ENST00000541342 PRSS2P07478 247 aa12.3□□□□□ -0.44
SPIDR-227ENST00000541342 CITED1Q99966 193 aa12.3□□□□□ -0.44
SPIDR-227ENST00000541342 TRRAPQ9Y4A5 3859 aa12.3□□□□□ -0.44
SPIDR-227ENST00000541342 TEX49A0A1B0GTD5 131 aa12.29□□□□□ -0.44
SPIDR-227ENST00000541342 GIG44P09565 113 aaPredicted RBP12.29□□□□□ -0.44
SPIDR-227ENST00000541342 NPC2P61916 151 aa12.29□□□□□ -0.44
SPIDR-227ENST00000541342 ZNF415Q09FC8 603 aa12.29□□□□□ -0.44
SPIDR-227ENST00000541342 MIAQ16674 131 aa12.29□□□□□ -0.44
SPIDR-227ENST00000541342 FAM110AQ9BQ89 295 aa12.29□□□□□ -0.44
SPIDR-227ENST00000541342 F8P00451 2351 aa12.29□□□□□ -0.44
SPIDR-227ENST00000541342 IGHV3-38A0A0C4DH36 116 aa12.28□□□□□ -0.44
SPIDR-227ENST00000541342 TMEM262E9PQX1 116 aa12.27□□□□□ -0.44
SPIDR-227ENST00000541342 CMC4P56277 68 aaPredicted RBP12.27□□□□□ -0.44
SPIDR-227ENST00000541342 SPANXA1Q9NS26 97 aa12.27□□□□□ -0.44
SPIDR-227ENST00000541342 ICOSQ9Y6W8 199 aa12.27□□□□□ -0.44
SPIDR-227ENST00000541342 IGHV3OR16-12A0A075B7B8 117 aa12.27□□□□□ -0.45
SPIDR-227ENST00000541342 TEP1Q99973 2627 aaKnown RBP12.26□□□□□ -0.45
SPIDR-227ENST00000541342 TRBV10-2A0A0K0K1G8 114 aa12.26□□□□□ -0.45
SPIDR-227ENST00000541342 RPL13AP40429 203 aaKnown RBP12.26□□□□□ -0.45
SPIDR-227ENST00000541342 ZFAND6Q6FIF0 208 aa12.26□□□□□ -0.45
SPIDR-227ENST00000541342 ATRQ13535 2644 aa12.26□□□□□ -0.45
SPIDR-227ENST00000541342 RNF183Q96D59 192 aa12.26□□□□□ -0.45
SPIDR-227ENST00000541342 H7C423 109 aa12.25□□□□□ -0.45
SPIDR-227ENST00000541342 RPL35AP18077 110 aaKnown RBP12.25□□□□□ -0.45
SPIDR-227ENST00000541342 PIK3CD-AS1Q5SR53 167 aa12.25□□□□□ -0.45
SPIDR-227ENST00000541342 DAND5Q8N907 189 aa12.25□□□□□ -0.45
SPIDR-227ENST00000541342 CDKN2A-AS1Q9UH64 79 aa12.25□□□□□ -0.45
SPIDR-227ENST00000541342 IGHV3-53P01767 116 aa12.24□□□□□ -0.45
SPIDR-227ENST00000541342 CLEC2BQ92478 149 aa12.24□□□□□ -0.45
SPIDR-227ENST00000541342 IL17DQ8TAD2 202 aa12.23□□□□□ -0.45
SPIDR-227ENST00000541342 TRAV4A0A0B4J268 109 aa12.23□□□□□ -0.45
SPIDR-227ENST00000541342 IGLV5-45A0A087WSX0 123 aa12.22□□□□□ -0.45
SPIDR-227ENST00000541342 COX6A2Q02221 97 aa12.22□□□□□ -0.45
SPIDR-227ENST00000541342 TMEM101Q96IK0 257 aa12.22□□□□□ -0.45
SPIDR-227ENST00000541342 NHLRC4P0CG21 123 aaPredicted RBP12.21□□□□□ -0.45
SPIDR-227ENST00000541342 CSNK1G2-AS1Q8NCQ2 148 aa12.21□□□□□ -0.45
SPIDR-227ENST00000541342 NOTCH3Q9UM47 2321 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms