RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 SMIM11AP58511 58 aa2.53□□□□□ -2
PRKDC-209ENST00000540819 PMCHL1Q16048 86 aa2.53□□□□□ -2
PRKDC-209ENST00000540819 ETDBQ3ZM63 59 aa2.53□□□□□ -2
PRKDC-209ENST00000540819 HIGD1BQ9P298 99 aa2.53□□□□□ -2
PRKDC-209ENST00000540819 SIPA1L3O60292 1781 aaPredicted RBP2.53□□□□□ -2
PRKDC-209ENST00000540819 IQSEC2Q5JU85 1478 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 NLRP1Q9C000 1473 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 KRTAP13-4Q3LI77 160 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 TMEM170BQ5T4T1 132 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 UNQ6190/PRO20217Q6UXQ8 127 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 AMELXQ99217 191 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 R4GMQ9 66 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 V9GYV3 84 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 CDK13Q14004 1512 aaKnown RBP2.52□□□□□ -2.01
PRKDC-209ENST00000540819 EHBP1L1Q8N3D4 1523 aa2.52□□□□□ -2.01
PRKDC-209ENST00000540819 A0A1W2PPM0 123 aa2.51□□□□□ -2.01
PRKDC-209ENST00000540819 NMSQ5H8A3 153 aa2.51□□□□□ -2.01
PRKDC-209ENST00000540819 ARHGEF5Q12774 1597 aa2.51□□□□□ -2.01
PRKDC-209ENST00000540819 COL5A1P20908 1838 aaPredicted RBP2.51□□□□□ -2.01
PRKDC-209ENST00000540819 MRC1P22897 1456 aa2.51□□□□□ -2.01
PRKDC-209ENST00000540819 KANTRA0A1W2PQU2 76 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 CCL18P55774 89 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 SNRPFP62306 86 aaKnown RBP2.5□□□□□ -2.01
PRKDC-209ENST00000540819 DEFB103AP81534 67 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 SFTA2Q6UW10 78 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 PP632Q6XCG6 107 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 LINC00208Q96KT6 92 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 LINC01600Q96MT4 127 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 HMGXB3Q12766 1538 aa2.5□□□□□ -2.01
PRKDC-209ENST00000540819 A0A087WTM6 91 aa2.49□□□□□ -2.01
PRKDC-209ENST00000540819 FAM223AQ8IWN6 122 aa2.49□□□□□ -2.01
PRKDC-209ENST00000540819 SMCO4Q9NRQ5 59 aa2.49□□□□□ -2.01
PRKDC-209ENST00000540819 NRXN1Q9ULB1 1477 aa2.49□□□□□ -2.01
PRKDC-209ENST00000540819 BTAF1O14981 1849 aa2.49□□□□□ -2.01
PRKDC-209ENST00000540819 F2Z2F3 143 aa2.48□□□□□ -2.01
PRKDC-209ENST00000540819 FXYD1O00168 92 aa2.48□□□□□ -2.01
PRKDC-209ENST00000540819 SAA2P0DJI9 122 aaPredicted RBP2.48□□□□□ -2.01
PRKDC-209ENST00000540819 WFDC2Q14508 124 aa2.48□□□□□ -2.01
PRKDC-209ENST00000540819 OBSCN-AS1Q96MR7 158 aa2.48□□□□□ -2.01
PRKDC-209ENST00000540819 TMEM14BQ9NUH8 114 aa2.48□□□□□ -2.01
PRKDC-209ENST00000540819 PTPN23Q9H3S7 1636 aa2.48□□□□□ -2.01
PRKDC-209ENST00000540819 LAMA4Q16363 1823 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 MYO7BQ6PIF6 2116 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 ACYP1P07311 99 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 IGLC2P0DOY2 106 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 IGLC3P0DOY3 106 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 CAV3P56539 151 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 Q6ZQY7 126 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 MED13LQ71F56 2210 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 ANKARQ7Z5J8 1434 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.47□□□□□ -2.01
PRKDC-209ENST00000540819 ABCC2Q92887 1545 aa2.47□□□□□ -2.01
PRKDC-209ENST00000540819 CFAP74Q9C0B2 1584 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.46□□□□□ -2.02
PRKDC-209ENST00000540819 ZNF815PA8K554 130 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 F8VRH5 84 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 PSMG4Q5JS54 123 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 BVES-AS1Q5T3Y7 98 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 ZNF563Q8TA94 476 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 WFDC6Q9BQY6 131 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 ARL2-SNX15V9GYD0 113 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 KCPQ6ZWJ8 1503 aa2.46□□□□□ -2.02
PRKDC-209ENST00000540819 NCOA2Q15596 1464 aa2.45□□□□□ -2.02
PRKDC-209ENST00000540819 SCN7AQ01118 1682 aa2.45□□□□□ -2.02
PRKDC-209ENST00000540819 PPRC1Q5VV67 1664 aaKnown RBP2.45□□□□□ -2.02
PRKDC-209ENST00000540819 KIF21AQ7Z4S6 1674 aa2.45□□□□□ -2.02
PRKDC-209ENST00000540819 NCOA6Q14686 2063 aaPredicted RBP2.45□□□□□ -2.02
PRKDC-209ENST00000540819 VWDEQ8N2E2 1590 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 BAHCC1Q9P281 2608 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 C10orf142B7Z368 130 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 PDCD5O14737 125 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 EFNA4P52798 201 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 DEFA5Q01523 94 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 LINC00643Q86TS7 51 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 BAGE3Q86Y29 109 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 CCL19Q99731 98 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 LINC01558Q9Y6Z2 57 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 ADAMTS12P58397 1594 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 ZC3H13Q5T200 1668 aaKnown RBP2.44□□□□□ -2.02
PRKDC-209ENST00000540819 SDK1Q7Z5N4 2213 aa2.44□□□□□ -2.02
PRKDC-209ENST00000540819 CLIP1P30622 1438 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 M0R135 149 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 KRTAP5-8O75690 187 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 PCOTHQ58A44 107 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 CFAP126Q5VTH2 177 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 BAGE2Q86Y30 109 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 ABCA8O94911 1581 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 E9PCH4 1651 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 RGPD8O14715 1765 aaPredicted RBP2.43□□□□□ -2.02
PRKDC-209ENST00000540819 RGPD5Q99666 1765 aa2.43□□□□□ -2.02
PRKDC-209ENST00000540819 ABCC1P33527 1531 aa2.42□□□□□ -2.02
PRKDC-209ENST00000540819 FAM223BA6NKX1 122 aa2.42□□□□□ -2.02
PRKDC-209ENST00000540819 UQCR11O14957 56 aa2.42□□□□□ -2.02
PRKDC-209ENST00000540819 HMGN2P05204 90 aaKnown RBP2.42□□□□□ -2.02
PRKDC-209ENST00000540819 HMGN3Q15651 99 aa2.42□□□□□ -2.02
PRKDC-209ENST00000540819 C10orf99Q6UWK7 81 aa2.42□□□□□ -2.02
PRKDC-209ENST00000540819 ASCC3Q8N3C0 2202 aaKnown RBP2.42□□□□□ -2.02
PRKDC-209ENST00000540819 LTN1O94822 1766 aa2.41□□□□□ -2.02
PRKDC-209ENST00000540819 MAP2P11137 1827 aaKnown RBP2.41□□□□□ -2.02
PRKDC-209ENST00000540819 F8WEM9 126 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 136.1 ms