RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TRAV4A0A0B4J268 109 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 TSPEAR-AS2P59090 65 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 VCX2Q9H322 139 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 SPANXA1Q9NS26 97 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 ZNF22P17026 224 aaPredicted RBP9.87□□□□□ -0.83
RTN3-210ENST00000540798 Q6ZTI0 123 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 C16orf74Q96GX8 76 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 A0A1B0GWB2 263 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 PLEKHB2Q96CS7 222 aa9.87□□□□□ -0.83
RTN3-210ENST00000540798 MRPS36P82909 103 aaKnown RBP9.86□□□□□ -0.83
RTN3-210ENST00000540798 TMEM170BQ5T4T1 132 aa9.86□□□□□ -0.83
RTN3-210ENST00000540798 Q6ZUT4 128 aa9.86□□□□□ -0.83
RTN3-210ENST00000540798 HIST1H4GQ99525 98 aa9.86□□□□□ -0.83
RTN3-210ENST00000540798 NHP2Q9NX24 153 aaKnown RBP9.86□□□□□ -0.83
RTN3-210ENST00000540798 TRBV10-1A0A0K0K1A3 114 aa9.86□□□□□ -0.83
RTN3-210ENST00000540798 OVOL2Q9BRP0 275 aa9.86□□□□□ -0.83
RTN3-210ENST00000540798 SETD2Q9BYW2 2564 aaPredicted RBP9.86□□□□□ -0.83
RTN3-210ENST00000540798 INAFM1C9JVW0 142 aa9.85□□□□□ -0.83
RTN3-210ENST00000540798 LEPROTO15243 131 aa9.85□□□□□ -0.83
RTN3-210ENST00000540798 NHLRC4P0CG21 123 aaPredicted RBP9.85□□□□□ -0.83
RTN3-210ENST00000540798 A0A0J9YXV3 536 aa9.85□□□□□ -0.83
RTN3-210ENST00000540798 RPL35AP18077 110 aaKnown RBP9.85□□□□□ -0.83
RTN3-210ENST00000540798 A0A0J9YY99 117 aa9.84□□□□□ -0.83
RTN3-210ENST00000540798 K7EQD1 137 aa9.84□□□□□ -0.83
RTN3-210ENST00000540798 J3QQQ9 107 aa9.84□□□□□ -0.83
RTN3-210ENST00000540798 APOMO95445 188 aa9.84□□□□□ -0.83
RTN3-210ENST00000540798 CEMP1Q6PRD7 247 aaPredicted RBP9.84□□□□□ -0.83
RTN3-210ENST00000540798 TIMM21Q9BVV7 248 aa9.84□□□□□ -0.83
RTN3-210ENST00000540798 NOP10Q9NPE3 64 aaKnown RBP9.84□□□□□ -0.83
RTN3-210ENST00000540798 F8P00451 2351 aa9.83□□□□□ -0.84
RTN3-210ENST00000540798 PF4P02776 101 aa9.83□□□□□ -0.84
RTN3-210ENST00000540798 SFTA2Q6UW10 78 aa9.83□□□□□ -0.84
RTN3-210ENST00000540798 NSD1Q96L73 2696 aaPredicted RBP9.83□□□□□ -0.84
RTN3-210ENST00000540798 IGHV3-38A0A0C4DH36 116 aa9.83□□□□□ -0.84
RTN3-210ENST00000540798 C12orf74Q32Q52 190 aa9.83□□□□□ -0.84
RTN3-210ENST00000540798 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.82□□□□□ -0.84
RTN3-210ENST00000540798 IGKV2-29A2NJV5 120 aaPredicted RBP9.82□□□□□ -0.84
RTN3-210ENST00000540798 TINCRA0A1B0GVN0 87 aa9.82□□□□□ -0.84
RTN3-210ENST00000540798 F8W1H4 67 aa9.82□□□□□ -0.84
RTN3-210ENST00000540798 UBE2D3P61077 147 aa9.82□□□□□ -0.84
RTN3-210ENST00000540798 UBE2D2P62837 147 aa9.82□□□□□ -0.84
RTN3-210ENST00000540798 SCGB1D4Q6XE38 83 aa9.82□□□□□ -0.84
RTN3-210ENST00000540798 SLC25A29Q8N8R3 303 aa9.82□□□□□ -0.84
RTN3-210ENST00000540798 GAGE13Q4V321 117 aa9.81□□□□□ -0.84
RTN3-210ENST00000540798 DAZ4Q86SG3 579 aaKnown RBP9.81□□□□□ -0.84
RTN3-210ENST00000540798 SBSPONQ8IVN8 264 aa9.81□□□□□ -0.84
RTN3-210ENST00000540798 DAZ3Q9NR90 486 aaKnown RBP9.81□□□□□ -0.84
RTN3-210ENST00000540798 RPL36AP83881 106 aaKnown RBP9.8□□□□□ -0.84
RTN3-210ENST00000540798 RPL36ALQ969Q0 106 aaKnown RBP9.8□□□□□ -0.84
RTN3-210ENST00000540798 HIVEP1P15822 2718 aa9.8□□□□□ -0.84
RTN3-210ENST00000540798 IGLL5B9A064 214 aa9.8□□□□□ -0.84
RTN3-210ENST00000540798 LGALS3P17931 250 aaKnown RBP9.8□□□□□ -0.84
RTN3-210ENST00000540798 FOXI1Q12951 378 aa9.8□□□□□ -0.84
RTN3-210ENST00000540798 RRN3P1Q2M238 152 aa9.8□□□□□ -0.84
RTN3-210ENST00000540798 JMJD1CQ15652 2540 aa9.8□□□□□ -0.84
RTN3-210ENST00000540798 NTM-AS1Q6ZSK4 140 aa9.8□□□□□ -0.84
RTN3-210ENST00000540798 UBE2D1P51668 147 aa9.79□□□□□ -0.84
RTN3-210ENST00000540798 CSDC2Q9Y534 153 aaKnown RBP9.79□□□□□ -0.84
RTN3-210ENST00000540798 FAM19A3Q7Z5A8 133 aa9.79□□□□□ -0.84
RTN3-210ENST00000540798 TRBV6-4A0A1B0GX49 114 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 IGHV3-30P01768 117 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 IGHV3-30-5P0DP03 117 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 RNASE13Q5GAN3 156 aaKnown RBP9.78□□□□□ -0.84
RTN3-210ENST00000540798 SPATA3Q8NHX4 192 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 PRO0461Q9UI25 63 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 IGLV5-45A0A087WSX0 123 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 CRLF1O75462 422 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 GAGE7O76087 117 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 GAGE12FP0CL80 117 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 GAGE12GP0CL81 117 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 GAGE12IP0CL82 117 aa9.78□□□□□ -0.84
RTN3-210ENST00000540798 C9orf66Q5T8R8 295 aa9.77□□□□□ -0.85
RTN3-210ENST00000540798 LINC00612Q8N6U2 182 aa9.77□□□□□ -0.85
RTN3-210ENST00000540798 IGHV3-30-3P0DP02 117 aa9.77□□□□□ -0.85
RTN3-210ENST00000540798 TIRAPP58753 221 aa9.77□□□□□ -0.85
RTN3-210ENST00000540798 IGHV1-58A0A0C4DH39 117 aa9.76□□□□□ -0.85
RTN3-210ENST00000540798 LINC00694P0DN24 101 aa9.76□□□□□ -0.85
RTN3-210ENST00000540798 SRSF9Q13242 221 aaKnown RBP eCLIP9.76□□□□□ -0.85
RTN3-210ENST00000540798 ZFAND6Q6FIF0 208 aa9.76□□□□□ -0.85
RTN3-210ENST00000540798 SMCPP49901 116 aaPredicted RBP9.76□□□□□ -0.85
RTN3-210ENST00000540798 C10orf126Q8N4M7 172 aa9.76□□□□□ -0.85
RTN3-210ENST00000540798 TRGV2A0A075B6R0 118 aa9.76□□□□□ -0.85
RTN3-210ENST00000540798 KIR2DL5BQ8NHK3 375 aa9.76□□□□□ -0.85
RTN3-210ENST00000540798 FN1P02751 2386 aaKnown RBP9.75□□□□□ -0.85
RTN3-210ENST00000540798 GAGE12JA6NER3 117 aa9.75□□□□□ -0.85
RTN3-210ENST00000540798 GAGE4Q13068 117 aa9.75□□□□□ -0.85
RTN3-210ENST00000540798 FHL2Q14192 279 aa9.75□□□□□ -0.85
RTN3-210ENST00000540798 VSIG2Q96IQ7 327 aa9.75□□□□□ -0.85
RTN3-210ENST00000540798 VWFP04275 2813 aa9.75□□□□□ -0.85
RTN3-210ENST00000540798 IGHV3-64A0A075B6Q5 118 aa9.74□□□□□ -0.85
RTN3-210ENST00000540798 C2CD3Q4AC94 2353 aa9.74□□□□□ -0.85
RTN3-210ENST00000540798 X6R8D5 127 aa9.74□□□□□ -0.85
RTN3-210ENST00000540798 TRAV8-3A0A0A6YYJ7 113 aa9.73□□□□□ -0.85
RTN3-210ENST00000540798 A0A0J9YXY3 114 aa9.73□□□□□ -0.85
RTN3-210ENST00000540798 LITAFQ99732 161 aa9.73□□□□□ -0.85
RTN3-210ENST00000540798 H7C423 109 aa9.73□□□□□ -0.85
RTN3-210ENST00000540798 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.73□□□□□ -0.85
RTN3-210ENST00000540798 CARD19Q96LW7 228 aa9.73□□□□□ -0.85
RTN3-210ENST00000540798 LOC100131303A0A0U1RQF7 123 aa9.72□□□□□ -0.85
RTN3-210ENST00000540798 SMIM9A6NGZ8 99 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms