RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 C9orf85Q96MD7 179 aa10.42□□□□□ -0.74
COLCA1-204ENST00000540738 RETNQ9HD89 108 aa10.42□□□□□ -0.74
COLCA1-204ENST00000540738 PCP4P48539 62 aa10.41□□□□□ -0.74
COLCA1-204ENST00000540738 C2CD3Q4AC94 2353 aa10.41□□□□□ -0.74
COLCA1-204ENST00000540738 COX7BP24311 80 aa10.41□□□□□ -0.74
COLCA1-204ENST00000540738 NDUFS5O43920 106 aa10.4□□□□□ -0.74
COLCA1-204ENST00000540738 BAALC-AS2P0C853 105 aa10.4□□□□□ -0.74
COLCA1-204ENST00000540738 CD164L2Q6UWJ8 174 aa10.4□□□□□ -0.74
COLCA1-204ENST00000540738 LINC00474Q9P2X8 69 aa10.4□□□□□ -0.74
COLCA1-204ENST00000540738 RNASE3P12724 160 aaKnown RBP10.4□□□□□ -0.74
COLCA1-204ENST00000540738 HIGD2AQ9BW72 106 aa10.4□□□□□ -0.74
COLCA1-204ENST00000540738 SIGMAR1Q99720 223 aa10.4□□□□□ -0.74
COLCA1-204ENST00000540738 A4D1N5 150 aa10.4□□□□□ -0.75
COLCA1-204ENST00000540738 LRCOL1A6NCL2 159 aa10.39□□□□□ -0.75
COLCA1-204ENST00000540738 TRBV27A0A0K0K1C4 114 aa10.39□□□□□ -0.75
COLCA1-204ENST00000540738 CRIP1P50238 77 aa10.39□□□□□ -0.75
COLCA1-204ENST00000540738 ODF1Q14990 250 aa10.39□□□□□ -0.75
COLCA1-204ENST00000540738 MAJINQ3KP22 176 aa10.39□□□□□ -0.75
COLCA1-204ENST00000540738 PPDPFLQ8WWR9 84 aa10.39□□□□□ -0.75
COLCA1-204ENST00000540738 DAND5Q8N907 189 aa10.38□□□□□ -0.75
COLCA1-204ENST00000540738 LINC00173Q6ZV60 143 aa10.38□□□□□ -0.75
COLCA1-204ENST00000540738 UBE2V1Q13404 147 aa10.38□□□□□ -0.75
COLCA1-204ENST00000540738 PYGO1Q9Y3Y4 419 aa10.38□□□□□ -0.75
COLCA1-204ENST00000540738 CPAMD8Q8IZJ3 1885 aa10.38□□□□□ -0.75
COLCA1-204ENST00000540738 IGLV4-69A0A075B6H9 119 aa10.38□□□□□ -0.75
COLCA1-204ENST00000540738 IGLV2-11P01706 119 aa10.38□□□□□ -0.75
COLCA1-204ENST00000540738 TRACP01848 142 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 KRTAP24-1Q3LI83 254 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 FAM19A1Q7Z5A9 133 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 IGLV4-3A0A075B6K6 122 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 PRR9Q5T870 116 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 IBA57-AS1B1ANH7 110 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 F8W1H4 67 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 NPSP0C0P6 89 aa10.37□□□□□ -0.75
COLCA1-204ENST00000540738 ANKRD39Q53RE8 183 aa10.36□□□□□ -0.75
COLCA1-204ENST00000540738 SPANXCQ9NY87 97 aa10.36□□□□□ -0.75
COLCA1-204ENST00000540738 LOC107984640A0A0U1RRK4 108 aa10.36□□□□□ -0.75
COLCA1-204ENST00000540738 CDKN2A-AS1Q9UH64 79 aa10.36□□□□□ -0.75
COLCA1-204ENST00000540738 HCFC1P51610 2035 aa10.36□□□□□ -0.75
COLCA1-204ENST00000540738 Q6ZTC4 211 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 HIGD1BQ9P298 99 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 G3V4G9 280 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 K7ERJ3 54 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 UBE2D3P61077 147 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 UBE2D2P62837 147 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 A0A1W2PPM0 123 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 LECT2O14960 151 aa10.35□□□□□ -0.75
COLCA1-204ENST00000540738 FAM19A5Q7Z5A7 132 aaPredicted RBP10.35□□□□□ -0.75
COLCA1-204ENST00000540738 MTORP42345 2549 aa10.34□□□□□ -0.75
COLCA1-204ENST00000540738 SETD2Q9BYW2 2564 aaPredicted RBP10.34□□□□□ -0.75
COLCA1-204ENST00000540738 LOC100131303A0A0U1RQF7 123 aa10.34□□□□□ -0.75
COLCA1-204ENST00000540738 PTPRBP23467 1997 aa10.34□□□□□ -0.75
COLCA1-204ENST00000540738 EDN2P20800 178 aa10.34□□□□□ -0.75
COLCA1-204ENST00000540738 ANAPC13Q9BS18 74 aa10.34□□□□□ -0.75
COLCA1-204ENST00000540738 SPANXDQ9BXN6 97 aa10.34□□□□□ -0.75
COLCA1-204ENST00000540738 UBE2D1P51668 147 aa10.33□□□□□ -0.76
COLCA1-204ENST00000540738 ANKRD29Q8N6D5 301 aa10.33□□□□□ -0.76
COLCA1-204ENST00000540738 ZNF706Q9Y5V0 76 aaPredicted RBP10.33□□□□□ -0.76
COLCA1-204ENST00000540738 EXPH5Q8NEV8 1989 aa10.33□□□□□ -0.76
COLCA1-204ENST00000540738 JMJD7-PLA2G4BH0Y9G9 81 aa10.33□□□□□ -0.76
COLCA1-204ENST00000540738 POLQO75417 2590 aa10.33□□□□□ -0.76
COLCA1-204ENST00000540738 K7EP34 96 aa10.32□□□□□ -0.76
COLCA1-204ENST00000540738 DLEU1O43261 78 aa10.32□□□□□ -0.76
COLCA1-204ENST00000540738 C1orf158Q8N1D5 194 aa10.32□□□□□ -0.76
COLCA1-204ENST00000540738 C11orf21Q9P2W6 132 aa10.32□□□□□ -0.76
COLCA1-204ENST00000540738 LINC00959A0A1B0GUT2 108 aa10.32□□□□□ -0.76
COLCA1-204ENST00000540738 MRPS36P82909 103 aaKnown RBP10.32□□□□□ -0.76
COLCA1-204ENST00000540738 SPATA12Q7Z6I5 190 aa10.32□□□□□ -0.76
COLCA1-204ENST00000540738 C1orf134Q5TEV5 83 aa10.31□□□□□ -0.76
COLCA1-204ENST00000540738 ATG2AQ2TAZ0 1938 aa10.31□□□□□ -0.76
COLCA1-204ENST00000540738 MRPS12O15235 138 aaKnown RBP10.31□□□□□ -0.76
COLCA1-204ENST00000540738 FHL3Q13643 280 aa10.31□□□□□ -0.76
COLCA1-204ENST00000540738 NREPQ16612 68 aa10.31□□□□□ -0.76
COLCA1-204ENST00000540738 FLNBO75369 2602 aaKnown RBP10.31□□□□□ -0.76
COLCA1-204ENST00000540738 TSHBP01222 138 aa10.3□□□□□ -0.76
COLCA1-204ENST00000540738 RNF185Q96GF1 192 aa10.3□□□□□ -0.76
COLCA1-204ENST00000540738 ZNF22P17026 224 aaPredicted RBP10.3□□□□□ -0.76
COLCA1-204ENST00000540738 PDE6GP18545 87 aa10.3□□□□□ -0.76
COLCA1-204ENST00000540738 NUPR1O60356 82 aa10.3□□□□□ -0.76
COLCA1-204ENST00000540738 PRM2P04554 102 aa10.3□□□□□ -0.76
COLCA1-204ENST00000540738 MUC7Q8TAX7 377 aa10.3□□□□□ -0.76
COLCA1-204ENST00000540738 SPANXB1Q9NS25 103 aaPredicted RBP10.29□□□□□ -0.76
COLCA1-204ENST00000540738 TMEM256-PLSCR3K7ERE1 68 aa10.29□□□□□ -0.76
COLCA1-204ENST00000540738 XAGE1AQ9HD64 81 aa10.29□□□□□ -0.76
COLCA1-204ENST00000540738 TANC2Q9HCD6 1990 aa10.29□□□□□ -0.76
COLCA1-204ENST00000540738 A0A0J9YXY3 114 aa10.29□□□□□ -0.76
COLCA1-204ENST00000540738 BEAN1Q3B7T3 259 aa10.29□□□□□ -0.76
COLCA1-204ENST00000540738 NTN5Q8WTR8 489 aaPredicted RBP10.28□□□□□ -0.76
COLCA1-204ENST00000540738 TNRC6BQ9UPQ9 1833 aaKnown RBP10.28□□□□□ -0.76
COLCA1-204ENST00000540738 ETDBQ3ZM63 59 aa10.28□□□□□ -0.76
COLCA1-204ENST00000540738 F8P00451 2351 aa10.28□□□□□ -0.76
COLCA1-204ENST00000540738 RNASE8Q8TDE3 154 aaKnown RBP10.28□□□□□ -0.76
COLCA1-204ENST00000540738 H3BMG7 143 aa10.28□□□□□ -0.76
COLCA1-204ENST00000540738 POLR2KP53803 58 aaKnown RBP10.27□□□□□ -0.77
COLCA1-204ENST00000540738 TMEM223A0PJW6 202 aa10.27□□□□□ -0.77
COLCA1-204ENST00000540738 IGLV5-52A0A0A0MRZ9 124 aa10.27□□□□□ -0.77
COLCA1-204ENST00000540738 ANKRD17O75179 2603 aaKnown RBP10.27□□□□□ -0.77
COLCA1-204ENST00000540738 ACYP1P07311 99 aa10.26□□□□□ -0.77
COLCA1-204ENST00000540738 RBM3P98179 157 aaKnown RBP10.26□□□□□ -0.77
COLCA1-204ENST00000540738 UBE2D4Q9Y2X8 147 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms