RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 FXYD2P54710 66 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 TIRAPP58753 221 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 UBE2D3P61077 147 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 UBE2D2P62837 147 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 AMMECR1LQ6DCA0 310 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 DGAT2L7PQ6IED9 249 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 MAPKAPK5-AS1Q8N8E1 139 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 SLC25A29Q8N8R3 303 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 ZNRF2Q8NHG8 242 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 KIR2DL5BQ8NHK3 375 aa3.98□□□□□ -1.77
PCF11-205ENST00000530906 TRGV2A0A075B6R0 118 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 IGHV3-73A0A0B4J1V6 119 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 A0A0J9YY99 117 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 H3BUT2 72 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 TIMM17BO60830 172 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 CRLF1O75462 422 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 UBE2D1P51668 147 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 HERVK_113P63121 156 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 SRSF9Q13242 221 aaKnown RBP eCLIP3.97□□□□□ -1.77
PCF11-205ENST00000530906 C12orf74Q32Q52 190 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 LINC00612Q8N6U2 182 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 PHLDA1Q8WV24 401 aaPredicted RBP3.97□□□□□ -1.77
PCF11-205ENST00000530906 COPS9Q8WXC6 57 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 RNF183Q96D59 192 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 TTTY13Q9BZ97 58 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 PPDPFQ9H3Y8 114 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 GEMIN7Q9H840 131 aaKnown RBP3.97□□□□□ -1.77
PCF11-205ENST00000530906 NHP2Q9NX24 153 aaKnown RBP3.97□□□□□ -1.77
PCF11-205ENST00000530906 CSMD1Q96PZ7 3565 aa3.97□□□□□ -1.77
PCF11-205ENST00000530906 IGHV3OR16-12A0A075B7B8 117 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.96□□□□□ -1.78
PCF11-205ENST00000530906 IGHV1-58A0A0C4DH39 117 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 A0A0J9YXV3 536 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 A0A0J9YXY3 114 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 PLAC8L1A1L4L8 177 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 APOC4P55056 127 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 TCTAP57738 103 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 RPL24P83731 157 aaKnown RBP3.96□□□□□ -1.78
PCF11-205ENST00000530906 Q6ZTI0 123 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 TMEM101Q96IK0 257 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 CITED1Q99966 193 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 TMEM243Q9BU79 118 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 NOP10Q9NPE3 64 aaKnown RBP3.96□□□□□ -1.78
PCF11-205ENST00000530906 SPCS1Q9Y6A9 102 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 VPS13CQ709C8 3753 aa3.96□□□□□ -1.78
PCF11-205ENST00000530906 TRGV4A0A0C4DH28 118 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 TEX48A0A1B0GUV7 120 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 GAGE12BA1L429 117 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 LYRM9A8MSI8 78 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 IGLL5B9A064 214 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 K7ERU9 68 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 IGHV3-30-3P0DP02 117 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 IFITM1P13164 125 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 ZFAND6Q6FIF0 208 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 SFTA2Q6UW10 78 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 SBSPONQ8IVN8 264 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 FAM104AQ969W3 186 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 VSIG2Q96IQ7 327 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 ZNF479Q96JC4 524 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 ACANP16112 2415 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 WNK1Q9H4A3 2382 aa3.95□□□□□ -1.78
PCF11-205ENST00000530906 SVEP1Q4LDE5 3571 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 ITPR2Q14571 2701 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 TRBV20-1A0A075B6N2 111 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 A0A0B4J2C4 111 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 INAFM1C9JVW0 142 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 F8W1H4 67 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 UBE2L6O14933 153 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 GAGE7O76087 117 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 IGHV3-30P01768 117 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 GAGE12FP0CL80 117 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 GAGE12GP0CL81 117 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 GAGE12IP0CL82 117 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 LINC00694P0DN24 101 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 IGHV3-30-5P0DP03 117 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 RPL35AP18077 110 aaKnown RBP3.94□□□□□ -1.78
PCF11-205ENST00000530906 EMP1P54849 157 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 TSPEAR-AS2P59090 65 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 KRTAP10-3P60369 221 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 CIRBPQ14011 172 aaKnown RBP3.94□□□□□ -1.78
PCF11-205ENST00000530906 Q6ZUT4 128 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 WFDC9Q8NEX5 89 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 RAB37Q96AX2 223 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 OPRPNQ99935 248 aaPredicted RBP3.94□□□□□ -1.78
PCF11-205ENST00000530906 SMR3AQ99954 134 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 SPANXDQ9BXN6 97 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 SPANXCQ9NY87 97 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 MTORP42345 2549 aa3.94□□□□□ -1.78
PCF11-205ENST00000530906 FASNP49327 2511 aaKnown RBP3.93□□□□□ -1.78
PCF11-205ENST00000530906 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.93□□□□□ -1.78
PCF11-205ENST00000530906 IGLV5-39A0A0G2JS06 123 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 IGKV2-29A2NJV5 120 aaPredicted RBP3.93□□□□□ -1.78
PCF11-205ENST00000530906 NDUFA1O15239 70 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 PRM2P04554 102 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 HERV-K104P63124 156 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 SH2D6Q7Z4S9 175 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 C10orf126Q8N4M7 172 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 CDC42SE2Q9NRR3 84 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 PRO1854Q9UHT4 67 aa3.93□□□□□ -1.78
PCF11-205ENST00000530906 NDUFA12Q9UI09 145 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms