RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 SPANXB1Q9NS25 103 aaPredicted RBP11.29□□□□□ -0.6
USH1C-204ENST00000526313 GAGE12JA6NER3 117 aa11.28□□□□□ -0.6
USH1C-204ENST00000526313 UBE2D1P51668 147 aa11.28□□□□□ -0.6
USH1C-204ENST00000526313 GAGE4Q13068 117 aa11.28□□□□□ -0.6
USH1C-204ENST00000526313 GAGE5Q13069 117 aa11.28□□□□□ -0.6
USH1C-204ENST00000526313 GAGE13Q4V321 117 aa11.28□□□□□ -0.6
USH1C-204ENST00000526313 RNASE13Q5GAN3 156 aaKnown RBP11.28□□□□□ -0.6
USH1C-204ENST00000526313 SCGB1D4Q6XE38 83 aa11.28□□□□□ -0.6
USH1C-204ENST00000526313 H3BUT2 72 aa11.27□□□□□ -0.6
USH1C-204ENST00000526313 RAB37Q96AX2 223 aa11.27□□□□□ -0.6
USH1C-204ENST00000526313 NHP2Q9NX24 153 aaKnown RBP11.27□□□□□ -0.6
USH1C-204ENST00000526313 LGALS3P17931 250 aaKnown RBP11.27□□□□□ -0.61
USH1C-204ENST00000526313 C12orf74Q32Q52 190 aa11.27□□□□□ -0.61
USH1C-204ENST00000526313 FAM19A3Q7Z5A8 133 aa11.27□□□□□ -0.61
USH1C-204ENST00000526313 K7ERJ3 54 aa11.26□□□□□ -0.61
USH1C-204ENST00000526313 LINC00694P0DN24 101 aa11.26□□□□□ -0.61
USH1C-204ENST00000526313 TIRAPP58753 221 aa11.26□□□□□ -0.61
USH1C-204ENST00000526313 RBX1P62877 108 aa11.26□□□□□ -0.61
USH1C-204ENST00000526313 TEP1Q99973 2627 aaKnown RBP11.26□□□□□ -0.61
USH1C-204ENST00000526313 IGLV5-45A0A087WSX0 123 aa11.26□□□□□ -0.61
USH1C-204ENST00000526313 TRGV4A0A0C4DH28 118 aa11.25□□□□□ -0.61
USH1C-204ENST00000526313 A0A1W2PPM0 123 aa11.25□□□□□ -0.61
USH1C-204ENST00000526313 IGHV1-58A0A0C4DH39 117 aa11.24□□□□□ -0.61
USH1C-204ENST00000526313 LOC100131303A0A0U1RQF7 123 aa11.24□□□□□ -0.61
USH1C-204ENST00000526313 IGHV3-30-3P0DP02 117 aa11.24□□□□□ -0.61
USH1C-204ENST00000526313 DGAT2L7PQ6IED9 249 aa11.24□□□□□ -0.61
USH1C-204ENST00000526313 PCP4P48539 62 aa11.24□□□□□ -0.61
USH1C-204ENST00000526313 SAMD5Q5TGI4 173 aa11.24□□□□□ -0.61
USH1C-204ENST00000526313 ATRQ13535 2644 aa11.24□□□□□ -0.61
USH1C-204ENST00000526313 H7C423 109 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 SMAGPQ0VAQ4 97 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 SRSF9Q13242 221 aaKnown RBP eCLIP11.23□□□□□ -0.61
USH1C-204ENST00000526313 NAA38Q9BRA0 125 aaKnown RBP11.23□□□□□ -0.61
USH1C-204ENST00000526313 GAGE10A6NGK3 116 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 K7EP34 96 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 IGHV3-30P01768 117 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 IGHV3-30-5P0DP03 117 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 VSIG2Q96IQ7 327 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 CDC42SE2Q9NRR3 84 aa11.23□□□□□ -0.61
USH1C-204ENST00000526313 IGLL5B9A064 214 aa11.22□□□□□ -0.61
USH1C-204ENST00000526313 TMEM243Q9BU79 118 aa11.22□□□□□ -0.61
USH1C-204ENST00000526313 IGHV3-64A0A075B6Q5 118 aa11.21□□□□□ -0.61
USH1C-204ENST00000526313 C21orf62-AS1Q17RA5 79 aa11.21□□□□□ -0.61
USH1C-204ENST00000526313 RNF151Q2KHN1 245 aa11.21□□□□□ -0.61
USH1C-204ENST00000526313 GTF2H5Q6ZYL4 71 aa11.21□□□□□ -0.61
USH1C-204ENST00000526313 C10orf126Q8N4M7 172 aa11.21□□□□□ -0.61
USH1C-204ENST00000526313 TRAV8-3A0A0A6YYJ7 113 aa11.21□□□□□ -0.62
USH1C-204ENST00000526313 TMEM238LA0A1B0GVL6 79 aa11.21□□□□□ -0.62
USH1C-204ENST00000526313 A6NJY4 79 aa11.21□□□□□ -0.62
USH1C-204ENST00000526313 APOC4P55056 127 aa11.21□□□□□ -0.62
USH1C-204ENST00000526313 GEMIN7Q9H840 131 aaKnown RBP11.21□□□□□ -0.62
USH1C-204ENST00000526313 F8P00451 2351 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 FABP2P12104 132 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 LINC00242Q5T6M2 205 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 LYRM9A8MSI8 78 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 DEFB130BP0DP73 79 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 DEFB130AP0DP74 79 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 COX6A2Q02221 97 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 CDKN2A-AS1Q9UH64 79 aa11.2□□□□□ -0.62
USH1C-204ENST00000526313 TRRAPQ9Y4A5 3859 aa11.19□□□□□ -0.62
USH1C-204ENST00000526313 HERVK_113P63121 156 aa11.19□□□□□ -0.62
USH1C-204ENST00000526313 A0A0J9YXY3 114 aa11.18□□□□□ -0.62
USH1C-204ENST00000526313 OCIAD2Q56VL3 154 aa11.18□□□□□ -0.62
USH1C-204ENST00000526313 TRBV6-8A0A0A6YYG3 113 aa11.18□□□□□ -0.62
USH1C-204ENST00000526313 SPINK8P0C7L1 97 aa11.18□□□□□ -0.62
USH1C-204ENST00000526313 SPCS1Q9Y6A9 102 aa11.18□□□□□ -0.62
USH1C-204ENST00000526313 IGLV5-39A0A0G2JS06 123 aa11.17□□□□□ -0.62
USH1C-204ENST00000526313 ZFAND6Q6FIF0 208 aa11.17□□□□□ -0.62
USH1C-204ENST00000526313 UBE2L6O14933 153 aa11.17□□□□□ -0.62
USH1C-204ENST00000526313 DEFB135Q30KP9 77 aa11.17□□□□□ -0.62
USH1C-204ENST00000526313 LITAFQ99732 161 aa11.17□□□□□ -0.62
USH1C-204ENST00000526313 FAM222AQ5U5X8 452 aa11.16□□□□□ -0.62
USH1C-204ENST00000526313 TMEM101Q96IK0 257 aa11.16□□□□□ -0.62
USH1C-204ENST00000526313 NDUFA12Q9UI09 145 aa11.16□□□□□ -0.62
USH1C-204ENST00000526313 TMEM238C9JI98 176 aa11.15□□□□□ -0.62
USH1C-204ENST00000526313 VPS25Q9BRG1 176 aa11.15□□□□□ -0.62
USH1C-204ENST00000526313 PRO0255Q9UI72 69 aa11.15□□□□□ -0.62
USH1C-204ENST00000526313 FLNBO75369 2602 aaKnown RBP11.14□□□□□ -0.63
USH1C-204ENST00000526313 A8MZ25 164 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 K7ERU9 68 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 NBEAL2Q6ZNJ1 2754 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 IGHV4-28A0A0C4DH34 117 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 CFC1BP0CG36 223 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 CFC1P0CG37 223 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 KRTAP24-1Q3LI83 254 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 Q8NAQ8 132 aa11.14□□□□□ -0.63
USH1C-204ENST00000526313 TRAV13-1A0A0B4J241 112 aa11.13□□□□□ -0.63
USH1C-204ENST00000526313 F5H768 121 aa11.13□□□□□ -0.63
USH1C-204ENST00000526313 IGHV4-30-4P0DP06 118 aa11.13□□□□□ -0.63
USH1C-204ENST00000526313 MIFP14174 115 aa11.13□□□□□ -0.63
USH1C-204ENST00000526313 GYPEP15421 78 aa11.13□□□□□ -0.63
USH1C-204ENST00000526313 RNF183Q96D59 192 aa11.13□□□□□ -0.63
USH1C-204ENST00000526313 GAGE6Q13070 117 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 ATP6V0E2Q8NHE4 81 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 SPANXDQ9BXN6 97 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 SPANXCQ9NY87 97 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 SMIM1B2RUZ4 78 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 NDUFA1O15239 70 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 TIMM17BO60830 172 aa11.12□□□□□ -0.63
USH1C-204ENST00000526313 MUSTN1Q8IVN3 82 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms