RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ZNF25P17030 456 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-220ENST00000514190 FAM104AQ969W3 186 aa8.88□□□□□ -0.99
LIMCH1-220ENST00000514190 IFI27L1Q96BM0 104 aa8.88□□□□□ -0.99
LIMCH1-220ENST00000514190 IGLV4-3A0A075B6K6 122 aa8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 RBX1P62877 108 aa8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 MRPS36P82909 103 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 WFDC10BQ8IUB3 73 aa8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 OR5A1Q8NGJ0 315 aa8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 TMEM101Q96IK0 257 aa8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 OPRPNQ99935 248 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 UPK3BQ9BT76 320 aa8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 VPS13DQ5THJ4 4388 aa8.87□□□□□ -0.99
LIMCH1-220ENST00000514190 A0A087WX48 190 aa8.86□□□□□ -0.99
LIMCH1-220ENST00000514190 MPV17L2Q567V2 206 aa8.86□□□□□ -0.99
LIMCH1-220ENST00000514190 PAPPA-AS1Q5QFB9 102 aa8.86□□□□□ -0.99
LIMCH1-220ENST00000514190 ZNF664Q8N3J9 261 aa8.86□□□□□ -0.99
LIMCH1-220ENST00000514190 MAP1LC3CQ9BXW4 147 aa8.86□□□□□ -0.99
LIMCH1-220ENST00000514190 CDC42SE2Q9NRR3 84 aa8.86□□□□□ -0.99
LIMCH1-220ENST00000514190 IGLV4-60A0A075B6I1 120 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 PRSS1P07477 247 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 Q6ZN92 141 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 Q6ZUT4 128 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 Q8N3U1 123 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 Q8N976 141 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 BAALCQ8WXS3 180 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 VCX2Q9H322 139 aa8.85□□□□□ -0.99
LIMCH1-220ENST00000514190 SYS1-DBNDD2H3BUS1 97 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 SIVA1O15304 175 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 C3orf79P0CE67 100 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 DNAH10OSP0CZ25 163 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 LINC01556Q5JQF7 62 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 UBE2DNLQ8IWF7 75 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 OR10D4PQ8NGN7 298 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 AMELXQ99217 191 aa8.84□□□□□ -0.99
LIMCH1-220ENST00000514190 KRTDAPP60985 99 aa8.83□□□□□ -1
LIMCH1-220ENST00000514190 PMVKQ15126 192 aa8.83□□□□□ -1
LIMCH1-220ENST00000514190 SPATA12Q7Z6I5 190 aa8.83□□□□□ -1
LIMCH1-220ENST00000514190 CST9LQ9H4G1 147 aa8.83□□□□□ -1
LIMCH1-220ENST00000514190 Q9H8V8 135 aa8.83□□□□□ -1
LIMCH1-220ENST00000514190 TRAV12-1A0A0B4J245 112 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 LOC105371267A0A1B0GV96 52 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 PRSS29PA6NIE9 313 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 IGHV3-30P01768 117 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 IGHV3-33P01772 117 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 IGHV3-30-3P0DP02 117 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 IGHV3-30-5P0DP03 117 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 RNASE13Q5GAN3 156 aaKnown RBP8.82□□□□□ -1
LIMCH1-220ENST00000514190 ZC2HC1BQ5TFG8 222 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 PET117Q6UWS5 81 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 LINC00476Q8WZB0 136 aa8.82□□□□□ -1
LIMCH1-220ENST00000514190 ANGP03950 147 aaKnown RBP8.81□□□□□ -1
LIMCH1-220ENST00000514190 TEX43Q6ZNM6 134 aa8.81□□□□□ -1
LIMCH1-220ENST00000514190 LINC00269Q8N2A0 174 aa8.81□□□□□ -1
LIMCH1-220ENST00000514190 KLK12Q9UKR0 248 aa8.81□□□□□ -1
LIMCH1-220ENST00000514190 KMT2AQ03164 3969 aa8.8□□□□□ -1
LIMCH1-220ENST00000514190 DNAH6Q9C0G6 4158 aa8.8□□□□□ -1
LIMCH1-220ENST00000514190 DNAH10Q8IVF4 4471 aa8.8□□□□□ -1
LIMCH1-220ENST00000514190 BIRC6Q9NR09 4857 aa8.8□□□□□ -1
LIMCH1-220ENST00000514190 H0Y8G0 127 aa8.8□□□□□ -1
LIMCH1-220ENST00000514190 LGALS9CQ6DKI2 356 aa8.8□□□□□ -1
LIMCH1-220ENST00000514190 C2orf88Q9BSF0 95 aa8.8□□□□□ -1
LIMCH1-220ENST00000514190 K7EP13 123 aa8.79□□□□□ -1
LIMCH1-220ENST00000514190 LY6G6CO95867 125 aa8.79□□□□□ -1
LIMCH1-220ENST00000514190 ODF1Q14990 250 aa8.79□□□□□ -1
LIMCH1-220ENST00000514190 PRR34Q9NV39 138 aa8.79□□□□□ -1
LIMCH1-220ENST00000514190 CHTOPQ9Y3Y2 248 aaKnown RBP8.79□□□□□ -1
LIMCH1-220ENST00000514190 TRAV9-2A0A087WT02 112 aa8.78□□□□□ -1
LIMCH1-220ENST00000514190 UBE2D1P51668 147 aa8.78□□□□□ -1
LIMCH1-220ENST00000514190 AKR1D1P51857 326 aa8.78□□□□□ -1
LIMCH1-220ENST00000514190 REG3AQ06141 175 aa8.78□□□□□ -1
LIMCH1-220ENST00000514190 LINC01545Q5VT33 79 aa8.78□□□□□ -1
LIMCH1-220ENST00000514190 TRAV13-1A0A0B4J241 112 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 IGKV3OR2-268A0A0C4DH90 116 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 A0A0J9YXV3 536 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 LINC00959A0A1B0GUT2 108 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 C20orf202A1L168 122 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 IBA57-AS1B1ANH7 110 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 F8VRH5 84 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 CCL25O15444 150 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 ENHOQ6UWT2 76 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 C10orf126Q8N4M7 172 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 UBE2WQ96B02 151 aa8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 MRPL35Q9NZE8 188 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-220ENST00000514190 JOSD1Q15040 202 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-220ENST00000514190 SS18Q15532 418 aa8.76□□□□□ -1.01
LIMCH1-220ENST00000514190 CLPSL2Q6UWE3 100 aa8.76□□□□□ -1.01
LIMCH1-220ENST00000514190 FAM19A3Q7Z5A8 133 aa8.76□□□□□ -1.01
LIMCH1-220ENST00000514190 IGLV4-69A0A075B6H9 119 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 DPM2O94777 84 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 SCGB1D1O95968 90 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 CRPP02741 224 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 IGLC3P0DOY3 106 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 SEC11AP67812 179 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 LINC00242Q5T6M2 205 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 NFE4Q86UQ8 179 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 PMCHL2Q9BQD1 86 aa8.75□□□□□ -1.01
LIMCH1-220ENST00000514190 FRAS1Q86XX4 4008 aa8.74□□□□□ -1.01
LIMCH1-220ENST00000514190 TRAV8-4A0A0B4J246 113 aa8.74□□□□□ -1.01
LIMCH1-220ENST00000514190 TINCRA0A1B0GVN0 87 aa8.74□□□□□ -1.01
LIMCH1-220ENST00000514190 MIAQ16674 131 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms