RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 C1orf158Q8N1D5 194 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 FLVCR1-AS1Q8TAF5 88 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 ZNF625Q96I27 306 aaPredicted RBP3.85□□□□□ -1.79
USP54-216ENST00000498143 FAM19A4Q96LR4 140 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 PRR15LQ9BU68 103 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 FREM2Q5SZK8 3169 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 CDH23Q9H251 3354 aa3.85□□□□□ -1.79
USP54-216ENST00000498143 LRBAP50851 2863 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 TRBV7-1A0A0A6YYK4 115 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 LST1O00453 97 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 PSPHP1O15172 72 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 LEPROTO15243 131 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 CCKP06307 115 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 Q8N6K4 173 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 TP73-AS1Q9UF72 201 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 C8orf87E5RJ46 101 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 F8VRH5 84 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 JMJD7-PLA2G4BH0Y9G9 81 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 REG3AQ06141 175 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 IGHV3OR16-13A0A075B7E8 117 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 TRAV10A0A0B4J240 114 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 MRPS12O15235 138 aaKnown RBP3.84□□□□□ -1.79
USP54-216ENST00000498143 Q6ZRU5 148 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 C2orf91Q6ZV80 131 aa3.84□□□□□ -1.79
USP54-216ENST00000498143 MRPL35Q9NZE8 188 aaKnown RBP3.84□□□□□ -1.79
USP54-216ENST00000498143 IGKV1D-43A0A0B4J1Z2 117 aa3.84□□□□□ -1.8
USP54-216ENST00000498143 TMEM223A0PJW6 202 aa3.84□□□□□ -1.8
USP54-216ENST00000498143 BCE1O60756 84 aa3.84□□□□□ -1.8
USP54-216ENST00000498143 ANKRD36A6QL64 1941 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 FHL1Q13642 323 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 MINOS1Q5TGZ0 78 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 C1orf147Q96MC9 270 aaPredicted RBP3.83□□□□□ -1.8
USP54-216ENST00000498143 MINOS1-NBL1R4GNA1 71 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 MUC4Q99102 2169 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 A0A0J9YWU9 116 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 TRBV10-3A0A0K0K1G6 114 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 IGLV1-40P01703 118 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 ARMS2P0C7Q2 107 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 PRR26Q8N8Z3 221 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 NDUFA12Q9UI09 145 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 ANAPC1Q9H1A4 1944 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 SEC61BP60468 96 aaKnown RBP3.83□□□□□ -1.8
USP54-216ENST00000498143 LYZL1Q6UWQ5 148 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 CD177Q8N6Q3 437 aa3.83□□□□□ -1.8
USP54-216ENST00000498143 LTAP01374 205 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 LINC00310P59036 64 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 ORMDL1Q9P0S3 153 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 LHBP01229 141 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 Q6ZS46 218 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 SNURFQ9Y675 71 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 ICOSQ9Y6W8 199 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 VPS13AQ96RL7 3174 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 NF1P21359 2839 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 IGHV1OR15-1A0A075B7D0 117 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 IGHV3-72A0A0B4J1Y9 119 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 K7EMI3 77 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 OXTP01178 125 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 HTN1P15515 57 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 FAM74A4Q5TZK3 123 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 COL4A2P08572 1712 aa3.82□□□□□ -1.8
USP54-216ENST00000498143 A8MUN3 132 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 FGFBP3Q8TAT2 258 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 OPRPNQ99935 248 aaPredicted RBP3.81□□□□□ -1.8
USP54-216ENST00000498143 DENND4CQ5VZ89 1909 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 ATMQ13315 3056 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 DEFB131BA0A096LNP1 70 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 IGKV1-12A0A0C4DH73 117 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 IGKV1D-12P01611 117 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 C11orf1Q9H5F2 150 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 HHLA3Q9XRX5 114 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 AGRNO00468 2067 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 PDE6GP18545 87 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 LINC01554Q52M75 96 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 TMEM61Q8N0U2 210 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 PHF3Q92576 2039 aaKnown RBP3.81□□□□□ -1.8
USP54-216ENST00000498143 hDV103S1A0JD37 113 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 H0YGX0 51 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 TTTY13Q9BZ97 58 aa3.81□□□□□ -1.8
USP54-216ENST00000498143 IGKV3D-15A0A087WSY6 115 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 H0Y9J4 135 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 Q8N8P6 123 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 DCANP1Q8TF63 244 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 TRBV6-6A0A0A6YYG2 114 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 IGHV3-21A0A0B4J1V1 117 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 SH2D1AO60880 128 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 EBI3Q14213 229 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 LYPD2Q6UXB3 125 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 NFE4Q86UQ8 179 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 CYP4F30PQ9H0H9 118 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 MXRA5Q9NR99 2828 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 LRP4O75096 1905 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 H3BQ85 93 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 SMCPP49901 116 aaPredicted RBP3.8□□□□□ -1.8
USP54-216ENST00000498143 IGLV3-21P80748 117 aaPredicted RBP3.8□□□□□ -1.8
USP54-216ENST00000498143 GAFA1Q96PS6 74 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 BOD1L1Q8NFC6 3051 aa3.8□□□□□ -1.8
USP54-216ENST00000498143 ARHGAP32A7KAX9 2087 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 LOC100131303A0A0U1RQF7 123 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 C10orf142B7Z368 130 aa3.79□□□□□ -1.8
USP54-216ENST00000498143 IGHV3-48P01763 117 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms