RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 RPL18AQ02543 176 aaKnown RBP8.48□□□□□ -1.05
HDAC4-210ENST00000493582 PIK3CD-AS1Q5SR53 167 aa8.48□□□□□ -1.05
HDAC4-210ENST00000493582 BRD3OSQ6XYD6 125 aa8.48□□□□□ -1.05
HDAC4-210ENST00000493582 MALP21145 153 aa8.48□□□□□ -1.05
HDAC4-210ENST00000493582 C14orf132Q9NPU4 83 aa8.48□□□□□ -1.05
HDAC4-210ENST00000493582 TRAV25A0A0B4J276 109 aa8.47□□□□□ -1.05
HDAC4-210ENST00000493582 CUBNO60494 3623 aa8.47□□□□□ -1.05
HDAC4-210ENST00000493582 C2CD3Q4AC94 2353 aa8.47□□□□□ -1.05
HDAC4-210ENST00000493582 C11orf71Q6IPW1 123 aa8.47□□□□□ -1.05
HDAC4-210ENST00000493582 PRIMA1Q86XR5 153 aa8.47□□□□□ -1.05
HDAC4-210ENST00000493582 RNF152Q8N8N0 203 aa8.47□□□□□ -1.05
HDAC4-210ENST00000493582 MUC6Q6W4X9 2439 aa8.46□□□□□ -1.05
HDAC4-210ENST00000493582 SYNJ2BPP57105 145 aa8.46□□□□□ -1.05
HDAC4-210ENST00000493582 BLCAPP62952 87 aa8.46□□□□□ -1.05
HDAC4-210ENST00000493582 USMG5Q96IX5 58 aa8.46□□□□□ -1.05
HDAC4-210ENST00000493582 DNAL4O96015 105 aa8.46□□□□□ -1.06
HDAC4-210ENST00000493582 DGAT2L7PQ6IED9 249 aa8.46□□□□□ -1.06
HDAC4-210ENST00000493582 LINC00846Q9NV44 126 aa8.46□□□□□ -1.06
HDAC4-210ENST00000493582 CRYBG3Q68DQ2 2970 aa8.46□□□□□ -1.06
HDAC4-210ENST00000493582 RBMY1A1P0DJD3 496 aaKnown RBP8.45□□□□□ -1.06
HDAC4-210ENST00000493582 RBMY1CP0DJD4 496 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 RBMY1FQ15415 496 aaKnown RBP8.45□□□□□ -1.06
HDAC4-210ENST00000493582 FAM222AQ5U5X8 452 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 CCL21O00585 134 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 HRCT1Q6UXD1 115 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 SERP2Q8N6R1 65 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 UPK3BQ9BT76 320 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 WIPF1O43516 503 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 TMEM258P61165 79 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 LINC01561Q8N1V8 128 aa8.45□□□□□ -1.06
HDAC4-210ENST00000493582 IGHV3OR16-12A0A075B7B8 117 aa8.44□□□□□ -1.06
HDAC4-210ENST00000493582 LINC00242Q5T6M2 205 aa8.44□□□□□ -1.06
HDAC4-210ENST00000493582 HIST2H2BCQ6DN03 193 aa8.44□□□□□ -1.06
HDAC4-210ENST00000493582 HIST2H2BDQ6DRA6 164 aa8.44□□□□□ -1.06
HDAC4-210ENST00000493582 IGLV5-45A0A087WSX0 123 aa8.43□□□□□ -1.06
HDAC4-210ENST00000493582 IGLV5-39A0A0G2JS06 123 aa8.43□□□□□ -1.06
HDAC4-210ENST00000493582 SNRPD3P62318 126 aaKnown RBP8.43□□□□□ -1.06
HDAC4-210ENST00000493582 CSMD2Q7Z408 3487 aa8.43□□□□□ -1.06
HDAC4-210ENST00000493582 A0A087WYN8 130 aa8.43□□□□□ -1.06
HDAC4-210ENST00000493582 USP17L23D6RBM5 183 aa8.43□□□□□ -1.06
HDAC4-210ENST00000493582 ZNF292O60281 2723 aa8.43□□□□□ -1.06
HDAC4-210ENST00000493582 SMIM1B2RUZ4 78 aa8.42□□□□□ -1.06
HDAC4-210ENST00000493582 BPESC1Q9GZL8 116 aa8.42□□□□□ -1.06
HDAC4-210ENST00000493582 A0A1W2PPR1 153 aa8.42□□□□□ -1.06
HDAC4-210ENST00000493582 LMO4P61968 165 aa8.42□□□□□ -1.06
HDAC4-210ENST00000493582 Q5XG85 94 aa8.41□□□□□ -1.06
HDAC4-210ENST00000493582 ATRXP46100 2492 aa8.41□□□□□ -1.06
HDAC4-210ENST00000493582 LINC00337Q8N6G1 96 aa8.41□□□□□ -1.06
HDAC4-210ENST00000493582 PIMREGQ9BSJ6 248 aa8.41□□□□□ -1.06
HDAC4-210ENST00000493582 F5H768 121 aa8.4□□□□□ -1.06
HDAC4-210ENST00000493582 K7EMT4 169 aa8.4□□□□□ -1.06
HDAC4-210ENST00000493582 NCR3O14931 201 aa8.4□□□□□ -1.06
HDAC4-210ENST00000493582 C10orf105Q8TEF2 133 aa8.4□□□□□ -1.06
HDAC4-210ENST00000493582 COPS9Q8WXC6 57 aa8.4□□□□□ -1.06
HDAC4-210ENST00000493582 K7EQG2 157 aa8.4□□□□□ -1.07
HDAC4-210ENST00000493582 RPL28P46779 137 aaKnown RBP8.4□□□□□ -1.07
HDAC4-210ENST00000493582 Q6JHZ5 121 aa8.4□□□□□ -1.07
HDAC4-210ENST00000493582 H3BUX3 64 aa8.39□□□□□ -1.07
HDAC4-210ENST00000493582 FHL2Q14192 279 aa8.39□□□□□ -1.07
HDAC4-210ENST00000493582 CSPG4Q6UVK1 2322 aa8.39□□□□□ -1.07
HDAC4-210ENST00000493582 CRPP02741 224 aa8.39□□□□□ -1.07
HDAC4-210ENST00000493582 HILS1P60008 231 aa8.39□□□□□ -1.07
HDAC4-210ENST00000493582 WFDC9Q8NEX5 89 aa8.39□□□□□ -1.07
HDAC4-210ENST00000493582 SLPIP03973 132 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 C10orf99Q6UWK7 81 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 NOTCH3Q9UM47 2321 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 IGKV2-28A0A075B6P5 120 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 IGKV2D-28P01615 120 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 IGLV1-40P01703 118 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 SMIM11BQ8TCY0 68 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 ABCA2Q9BZC7 2435 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 SPTBN4Q9H254 2564 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 H3BUA1 57 aa8.38□□□□□ -1.07
HDAC4-210ENST00000493582 TRAV13-2A0A0B4J235 113 aa8.37□□□□□ -1.07
HDAC4-210ENST00000493582 FBXL19-AS1Q494R0 122 aa8.37□□□□□ -1.07
HDAC4-210ENST00000493582 LECT2O14960 151 aa8.37□□□□□ -1.07
HDAC4-210ENST00000493582 MIR7-3HGQ8N6C7 128 aa8.37□□□□□ -1.07
HDAC4-210ENST00000493582 IGHV4-38-2P0DP08 117 aa8.36□□□□□ -1.07
HDAC4-210ENST00000493582 ZNF415Q09FC8 603 aa8.36□□□□□ -1.07
HDAC4-210ENST00000493582 Q96MF0 132 aa8.36□□□□□ -1.07
HDAC4-210ENST00000493582 SND1-IT1Q9HBX3 110 aa8.36□□□□□ -1.07
HDAC4-210ENST00000493582 CFHR3Q02985 330 aa8.36□□□□□ -1.07
HDAC4-210ENST00000493582 PRORYQ9H606 182 aa8.36□□□□□ -1.07
HDAC4-210ENST00000493582 IGHV3-53P01767 116 aa8.35□□□□□ -1.07
HDAC4-210ENST00000493582 TRAV23DV6A0A075B6W5 121 aa8.35□□□□□ -1.07
HDAC4-210ENST00000493582 OBSCN-AS1Q96MR7 158 aa8.34□□□□□ -1.07
HDAC4-210ENST00000493582 IGF2RP11717 2491 aa8.34□□□□□ -1.07
HDAC4-210ENST00000493582 PF4P02776 101 aa8.34□□□□□ -1.07
HDAC4-210ENST00000493582 ADORA2A-AS1P86434 159 aa8.34□□□□□ -1.07
HDAC4-210ENST00000493582 SPG11Q96JI7 2443 aa8.34□□□□□ -1.07
HDAC4-210ENST00000493582 GHRHP01286 108 aa8.34□□□□□ -1.07
HDAC4-210ENST00000493582 RPL36AP83881 106 aaKnown RBP8.34□□□□□ -1.07
HDAC4-210ENST00000493582 RPL36ALQ969Q0 106 aaKnown RBP8.34□□□□□ -1.07
HDAC4-210ENST00000493582 TOMM7Q9P0U1 55 aa8.34□□□□□ -1.07
HDAC4-210ENST00000493582 CHD8Q9HCK8 2581 aa8.34□□□□□ -1.08
HDAC4-210ENST00000493582 DEFB131AP59861 70 aa8.33□□□□□ -1.08
HDAC4-210ENST00000493582 FAM19A1Q7Z5A9 133 aa8.33□□□□□ -1.08
HDAC4-210ENST00000493582 A6NDX4 124 aa8.32□□□□□ -1.08
HDAC4-210ENST00000493582 RBMY1BA6NDE4 496 aaKnown RBP8.32□□□□□ -1.08
HDAC4-210ENST00000493582 RBMY1EA6NEQ0 496 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms