RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 AMMECR1LQ6DCA0 310 aa6.67□□□□□ -1.34
USP54-214ENST00000492357 OR5A1Q8NGJ0 315 aa6.67□□□□□ -1.34
USP54-214ENST00000492357 CHCHD5Q9BSY4 110 aa6.67□□□□□ -1.34
USP54-214ENST00000492357 PRSS1P07477 247 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 RPL39P62891 51 aaKnown RBP6.66□□□□□ -1.34
USP54-214ENST00000492357 PYY3Q5JQD4 70 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 TEX43Q6ZNM6 134 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 FAM19A3Q7Z5A8 133 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 AMELXQ99217 191 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 C12orf57Q99622 126 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 C2orf88Q9BSF0 95 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 UPK3BQ9BT76 320 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 VCX2Q9H322 139 aa6.66□□□□□ -1.34
USP54-214ENST00000492357 MRPS16Q9Y3D3 137 aaKnown RBP6.66□□□□□ -1.34
USP54-214ENST00000492357 IGLV4-3A0A075B6K6 122 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 A0A087WX48 190 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 F8VRH5 84 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 PLNP26678 52 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 KRTDAPP60985 99 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 ZNF664Q8N3J9 261 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 BAALCQ8WXS3 180 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 WWC2-AS2Q96NR7 200 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 CDC42SE2Q9NRR3 84 aa6.65□□□□□ -1.34
USP54-214ENST00000492357 COL7A1Q02388 2944 aa6.65□□□□□ -1.35
USP54-214ENST00000492357 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.64□□□□□ -1.35
USP54-214ENST00000492357 IGKV2-29A2NJV5 120 aaPredicted RBP6.64□□□□□ -1.35
USP54-214ENST00000492357 IGLL5B9A064 214 aa6.64□□□□□ -1.35
USP54-214ENST00000492357 ODF1Q14990 250 aa6.64□□□□□ -1.35
USP54-214ENST00000492357 FBN3Q75N90 2809 aa6.64□□□□□ -1.35
USP54-214ENST00000492357 DNAH9Q9NYC9 4486 aa6.63□□□□□ -1.35
USP54-214ENST00000492357 ESRGQ1W209 222 aa6.63□□□□□ -1.35
USP54-214ENST00000492357 LINC01556Q5JQF7 62 aa6.63□□□□□ -1.35
USP54-214ENST00000492357 NFE4Q86UQ8 179 aa6.63□□□□□ -1.35
USP54-214ENST00000492357 CST9LQ9H4G1 147 aa6.63□□□□□ -1.35
USP54-214ENST00000492357 APLNQ9ULZ1 77 aa6.63□□□□□ -1.35
USP54-214ENST00000492357 HUWE1Q7Z6Z7 4374 aaKnown RBP6.63□□□□□ -1.35
USP54-214ENST00000492357 PRSS29PA6NIE9 313 aa6.62□□□□□ -1.35
USP54-214ENST00000492357 DPM2O94777 84 aa6.62□□□□□ -1.35
USP54-214ENST00000492357 DNAH10OSP0CZ25 163 aa6.62□□□□□ -1.35
USP54-214ENST00000492357 RBX1P62877 108 aa6.62□□□□□ -1.35
USP54-214ENST00000492357 LINC00173Q6ZV60 143 aa6.62□□□□□ -1.35
USP54-214ENST00000492357 C10orf126Q8N4M7 172 aa6.62□□□□□ -1.35
USP54-214ENST00000492357 MUC7Q8TAX7 377 aa6.62□□□□□ -1.35
USP54-214ENST00000492357 CHTOPQ9Y3Y2 248 aaKnown RBP6.62□□□□□ -1.35
USP54-214ENST00000492357 TRAV8-4A0A0B4J246 113 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 TMEM238LA0A1B0GVL6 79 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 TINCRA0A1B0GVN0 87 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 TMEM262E9PQX1 116 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 C3orf84H3BNL1 204 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 SCGB1D1O95968 90 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 IGLC3P0DOY3 106 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 HERVK_113P63121 156 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 GAGE6Q13070 117 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 Q6ZUT4 128 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 Q8N976 141 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 FAM104AQ969W3 186 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 PRR34Q9NV39 138 aa6.61□□□□□ -1.35
USP54-214ENST00000492357 IGLV5-45A0A087WSX0 123 aa6.6□□□□□ -1.35
USP54-214ENST00000492357 TRAV9-2A0A087WT02 112 aa6.6□□□□□ -1.35
USP54-214ENST00000492357 IGKCP01834 107 aa6.6□□□□□ -1.35
USP54-214ENST00000492357 UBE2D1P51668 147 aa6.6□□□□□ -1.35
USP54-214ENST00000492357 S100A12P80511 92 aa6.6□□□□□ -1.35
USP54-214ENST00000492357 MPV17L2Q567V2 206 aa6.6□□□□□ -1.35
USP54-214ENST00000492357 LINC01561Q8N1V8 128 aa6.6□□□□□ -1.35
USP54-214ENST00000492357 MRPL35Q9NZE8 188 aaKnown RBP6.6□□□□□ -1.35
USP54-214ENST00000492357 C11orf86A6NJI1 115 aa6.59□□□□□ -1.35
USP54-214ENST00000492357 HSBP1L1C9JCN9 74 aa6.59□□□□□ -1.35
USP54-214ENST00000492357 SIVA1O15304 175 aa6.59□□□□□ -1.35
USP54-214ENST00000492357 MIAQ16674 131 aa6.59□□□□□ -1.35
USP54-214ENST00000492357 LINC00588Q9Y4M8 146 aa6.59□□□□□ -1.35
USP54-214ENST00000492357 IGLV4-69A0A075B6H9 119 aa6.58□□□□□ -1.36
USP54-214ENST00000492357 IGLV4-60A0A075B6I1 120 aa6.58□□□□□ -1.36
USP54-214ENST00000492357 H3BRM9 83 aa6.58□□□□□ -1.36
USP54-214ENST00000492357 REG3AQ06141 175 aa6.58□□□□□ -1.36
USP54-214ENST00000492357 SS18Q15532 418 aa6.58□□□□□ -1.36
USP54-214ENST00000492357 DEFB104AQ8WTQ1 72 aa6.58□□□□□ -1.36
USP54-214ENST00000492357 CHAC1Q9BUX1 264 aa6.58□□□□□ -1.36
USP54-214ENST00000492357 PRKDCP78527 4128 aaKnown RBP6.58□□□□□ -1.36
USP54-214ENST00000492357 TRAV8-3A0A0A6YYJ7 113 aa6.57□□□□□ -1.36
USP54-214ENST00000492357 CRPP02741 224 aa6.57□□□□□ -1.36
USP54-214ENST00000492357 ANGP03950 147 aaKnown RBP6.57□□□□□ -1.36
USP54-214ENST00000492357 HERVK_113P61574 105 aa6.57□□□□□ -1.36
USP54-214ENST00000492357 TTC32Q5I0X7 151 aa6.57□□□□□ -1.36
USP54-214ENST00000492357 WFDC10BQ8IUB3 73 aa6.57□□□□□ -1.36
USP54-214ENST00000492357 OPRPNQ99935 248 aaPredicted RBP6.57□□□□□ -1.36
USP54-214ENST00000492357 VAMP8Q9BV40 100 aa6.57□□□□□ -1.36
USP54-214ENST00000492357 GEMIN7Q9H840 131 aaKnown RBP6.57□□□□□ -1.36
USP54-214ENST00000492357 COX11Q9Y6N1 276 aa6.57□□□□□ -1.36
USP54-214ENST00000492357 LINC00959A0A1B0GUT2 108 aa6.56□□□□□ -1.36
USP54-214ENST00000492357 H0Y8G0 127 aa6.56□□□□□ -1.36
USP54-214ENST00000492357 LINC00242Q5T6M2 205 aa6.56□□□□□ -1.36
USP54-214ENST00000492357 CDPF1Q6NVV7 123 aa6.56□□□□□ -1.36
USP54-214ENST00000492357 UBE2DNLQ8IWF7 75 aa6.56□□□□□ -1.36
USP54-214ENST00000492357 RMI2Q96E14 147 aa6.56□□□□□ -1.36
USP54-214ENST00000492357 A0A0J9YXV3 536 aa6.55□□□□□ -1.36
USP54-214ENST00000492357 IBA57-AS1B1ANH7 110 aa6.55□□□□□ -1.36
USP54-214ENST00000492357 FAM229AH3BQW9 127 aa6.55□□□□□ -1.36
USP54-214ENST00000492357 ZC2HC1BQ5TFG8 222 aa6.55□□□□□ -1.36
USP54-214ENST00000492357 SFTA2Q6UW10 78 aa6.55□□□□□ -1.36
USP54-214ENST00000492357 CD164L2Q6UWJ8 174 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms