RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 TRAV4A0A0B4J268 109 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 IGLV5-39A0A0G2JS06 123 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 H3BMM0 161 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 H7C423 109 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 J3KRW8 73 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 LST1O00453 97 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 CD28P10747 220 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 INSL3P51460 131 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 XGP55808 180 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 HERVK_113P63121 156 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 HERV-K104P63124 156 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 CIRBPQ14011 172 aaKnown RBP4.23□□□□□ -1.73
VPS41-214ENST00000490924 SFTA2Q6UW10 78 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 MUSTN1Q8IVN3 82 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 TMEM86BQ8N661 226 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 FAM104AQ969W3 186 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 GEMIN7Q9H840 131 aaKnown RBP4.23□□□□□ -1.73
VPS41-214ENST00000490924 JPT2Q9H910 190 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 NDUFA12Q9UI09 145 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 LINC00527Q9UJ94 153 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 UBE2D4Q9Y2X8 147 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 LRBAP50851 2863 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 IGHV4-30-2A0A087WSY4 118 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 TRAV26-1A0A087WT03 109 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 A0A0J9YXV3 536 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 C9JAW5 83 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 RS1O15537 224 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 HOXD3P31249 432 aaPredicted RBP4.22□□□□□ -1.73
VPS41-214ENST00000490924 CMC4P56277 68 aaPredicted RBP4.22□□□□□ -1.73
VPS41-214ENST00000490924 LY6EQ16553 131 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 FAM74A4Q5TZK3 123 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 FAM222AQ5U5X8 452 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 FAM110AQ9BQ89 295 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 OVOL2Q9BRP0 275 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 CHCHD7Q9BUK0 85 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 ICOSQ9Y6W8 199 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 ABCA2Q9BZC7 2435 aa4.22□□□□□ -1.73
VPS41-214ENST00000490924 NBASA2RRP1 2371 aa4.21□□□□□ -1.73
VPS41-214ENST00000490924 ITPR3Q14573 2671 aa4.21□□□□□ -1.73
VPS41-214ENST00000490924 ZFHX3Q15911 3703 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 TRBV7-7A0A0K0K1E9 115 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 C19orf84I3L1E1 186 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 TRIAP1O43715 76 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 SNCGO76070 127 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 INSP01308 110 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 TRACP01848 142 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 MT-ATP8P03928 68 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 ATP5G1P05496 136 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 KRTAP10-9P60411 292 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 GAGE2BQ13066 116 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 DAZ2Q13117 558 aaKnown RBP4.21□□□□□ -1.74
VPS41-214ENST00000490924 FHL3Q13643 280 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 SPINK13Q1W4C9 94 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 GAGE2EQ4V326 116 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 DAZ4Q86SG3 579 aaKnown RBP4.21□□□□□ -1.74
VPS41-214ENST00000490924 LRRC75A-AS1Q8N1F1 130 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 C11orf72Q8NBR9 251 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 C4orf3Q8WVX3 66 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 UBE2WQ96B02 151 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 RAX2Q96IS3 184 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 DAZ3Q9NR90 486 aaKnown RBP4.21□□□□□ -1.74
VPS41-214ENST00000490924 GAGE2DQ9UEU5 116 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 DCHS2Q6V1P9 2916 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 CREBBPQ92793 2442 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 MED13LQ71F56 2210 aa4.21□□□□□ -1.74
VPS41-214ENST00000490924 COL6A6A6NMZ7 2263 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 OTOGQ6ZRI0 2925 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.2□□□□□ -1.74
VPS41-214ENST00000490924 IGHV4-59P01825 116 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 EMP1P54849 157 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 SYNJ2BPP57105 145 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 DEFB1P60022 68 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 GAGE5Q13069 117 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 GAGE6Q13070 117 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 DEFB112Q30KQ8 113 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 SDIM1Q6ZPB5 146 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 ZNF702PQ9H963 129 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 SELENOKQ9Y6D0 94 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 LRRK2Q5S007 2527 aa4.2□□□□□ -1.74
VPS41-214ENST00000490924 IGKV3-7A0A075B6H7 116 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 TRAV12-2A0A075B6T6 113 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 IGHV3OR16-10A0A075B7F0 116 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 TRAV8-4A0A0B4J246 113 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 COX7A2LO14548 114 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 SPRY2O43597 315 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 GNLYP22749 145 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 Q1RN00 199 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 C2orf82Q6UX34 121 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 DAND5Q8N907 189 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 ANAPC13Q9BS18 74 aa4.19□□□□□ -1.74
VPS41-214ENST00000490924 RBMY1A1P0DJD3 496 aaKnown RBP4.18□□□□□ -1.74
VPS41-214ENST00000490924 RBMY1CP0DJD4 496 aa4.18□□□□□ -1.74
VPS41-214ENST00000490924 INAFM2P0DMQ5 153 aa4.18□□□□□ -1.74
VPS41-214ENST00000490924 NDUFV3P56181 108 aaKnown RBP4.18□□□□□ -1.74
VPS41-214ENST00000490924 RBMY1FQ15415 496 aaKnown RBP4.18□□□□□ -1.74
VPS41-214ENST00000490924 ZNF625Q96I27 306 aaPredicted RBP4.18□□□□□ -1.74
VPS41-214ENST00000490924 DUX5Q96PT3 197 aa4.18□□□□□ -1.74
VPS41-214ENST00000490924 DUX3Q96PT4 197 aa4.18□□□□□ -1.74
VPS41-214ENST00000490924 BEX4Q9NWD9 120 aaPredicted RBP4.18□□□□□ -1.74
VPS41-214ENST00000490924 USP9YO00507 2555 aaPredicted RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 197.7 ms