RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 HAMPP81172 84 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 SFTA2Q6UW10 78 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 SPINK6Q6UWN8 80 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 SSBP3-AS1Q7Z2R9 100 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 FAM213BQ8TBF2 198 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 AMELXQ99217 191 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 SBF2Q86WG5 1849 aa0.59□□□□□ -2.32
XRN1-213ENST00000489241 CACNA1EQ15878 2313 aa0.59□□□□□ -2.32
XRN1-213ENST00000489241 CACNA1CQ13936 2221 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 ASXL3Q9C0F0 2248 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 TRAV30A0A087WSZ9 112 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 UQCR11O14957 56 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 S100A10P60903 97 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 KRTAP21-1Q3LI58 79 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 TNCP24821 2201 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 KDM5AP29375 1690 aaKnown RBP0.58□□□□□ -2.32
XRN1-213ENST00000489241 KIF21AQ7Z4S6 1674 aa0.58□□□□□ -2.32
XRN1-213ENST00000489241 BTAF1O14981 1849 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 SHROOM2Q13796 1616 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 ZNF609O15014 1411 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 TET3O43151 1660 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 TMEM262E9PQX1 116 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 H3BQ15 152 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 SFT2D2O95562 160 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 KRTDAPP60985 99 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 Q0VG73 95 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 COX17Q14061 63 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 LINC01558Q9Y6Z2 57 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 POLQO75417 2590 aa0.57□□□□□ -2.32
XRN1-213ENST00000489241 CC2D2AQ9P2K1 1620 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 MUC5BQ9HC84 5762 aaPredicted RBP0.56□□□□□ -2.32
XRN1-213ENST00000489241 SPHKAPQ2M3C7 1700 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 ARHGAP5Q13017 1502 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 CRYM-AS1A6NIL9 109 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 TRAPPC2P0DI81 140 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 TRAPPC2BP0DI82 140 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 FAM167A-AS1Q96KT0 104 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 FAIMQ9NVQ4 179 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 ARL2-SNX15V9GYD0 113 aa0.56□□□□□ -2.32
XRN1-213ENST00000489241 ABCA12Q86UK0 2595 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 ABCA3Q99758 1704 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 KDM3BQ7LBC6 1761 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 TRAV22A0A0B4J277 110 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 A0A0D9SFI3 127 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 hADV29S1A0JD25 119 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 M0R3E3 92 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 S100A3P33764 101 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 NXT2Q9NPJ8 142 aaKnown RBP0.55□□□□□ -2.32
XRN1-213ENST00000489241 PRO1854Q9UHT4 67 aa0.55□□□□□ -2.32
XRN1-213ENST00000489241 TPRP12270 2363 aaKnown RBP0.55□□□□□ -2.32
XRN1-213ENST00000489241 GNGT2O14610 69 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 COX6CP09669 75 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 IGLC1P0CG04 106 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 Q6JHZ5 121 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 CDC42SE2Q9NRR3 84 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 AP4S1Q9Y587 144 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 LRRC37A2A6NM11 1700 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 ZFYVE16Q7Z3T8 1539 aa0.54□□□□□ -2.32
XRN1-213ENST00000489241 USP24Q9UPU5 2620 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 MGPP08493 103 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 UBA52P62987 128 aaKnown RBP0.53□□□□□ -2.32
XRN1-213ENST00000489241 SEC11AP67812 179 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 NCMAPQ5T1S8 102 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 FAM223AQ8IWN6 122 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 ACBD7Q8N6N7 88 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 LINC00472Q9H8W2 130 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 MYO7BQ6PIF6 2116 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 CNTLNQ9NXG0 1405 aa0.53□□□□□ -2.32
XRN1-213ENST00000489241 AHCTF1Q8WYP5 2266 aa0.53□□□□□ -2.33
XRN1-213ENST00000489241 MYOM1P52179 1685 aa0.53□□□□□ -2.33
XRN1-213ENST00000489241 PLCE1Q9P212 2302 aa0.52□□□□□ -2.33
XRN1-213ENST00000489241 ERCC6L2Q5T890 1561 aa0.52□□□□□ -2.33
XRN1-213ENST00000489241 M0R143 59 aa0.51□□□□□ -2.33
XRN1-213ENST00000489241 BCE1O60756 84 aa0.51□□□□□ -2.33
XRN1-213ENST00000489241 UBE2D3P61077 147 aa0.51□□□□□ -2.33
XRN1-213ENST00000489241 UBE2D2P62837 147 aa0.51□□□□□ -2.33
XRN1-213ENST00000489241 TOP2BQ02880 1626 aa0.51□□□□□ -2.33
XRN1-213ENST00000489241 PDCD11Q14690 1871 aaKnown RBP0.51□□□□□ -2.33
XRN1-213ENST00000489241 F8P00451 2351 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 CHD1O14646 1710 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 LRP6O75581 1613 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 ARHGEF5Q12774 1597 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 ABCC5O15440 1437 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 A0A1B0GWA3 101 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 MT-ATP8P03928 68 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 PMCHL2Q9BQD1 86 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 PRO0255Q9UI72 69 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 SPCS1Q9Y6A9 102 aa0.5□□□□□ -2.33
XRN1-213ENST00000489241 TOPAZ1Q8N9V7 1692 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 HMGXB3Q12766 1538 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 SHANK2Q9UPX8 1470 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 FAM223BA6NKX1 122 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 MPC2O95563 127 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 LINC00032P0C843 101 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 FDCSPQ8NFU4 85 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 TMEM263Q8WUH6 116 aaKnown RBP0.49□□□□□ -2.33
XRN1-213ENST00000489241 CNFNQ9BYD5 112 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 ANK2Q01484 3957 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 RAPGEF6Q8TEU7 1601 aa0.49□□□□□ -2.33
XRN1-213ENST00000489241 FAM208BQ5VWN6 2430 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms