RNA–Protein interactions for RNA: ENST00000482563.1

RBM39-233, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 1,737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-233	ENST00000482563	PRO0461	Q9UI25	63 aa		3.23	□□□□□ -1.89
RBM39-233	ENST00000482563	EHBP1L1	Q8N3D4	1523 aa		3.23	□□□□□ -1.89
RBM39-233	ENST00000482563	FXYD1	O00168	92 aa		3.22	□□□□□ -1.89
RBM39-233	ENST00000482563		V9GYV3	84 aa		3.22	□□□□□ -1.89
RBM39-233	ENST00000482563	ADIRF	Q15847	76 aa		3.22	□□□□□ -1.89
RBM39-233	ENST00000482563		V9GYH0	126 aa		3.22	□□□□□ -1.89
RBM39-233	ENST00000482563	KRTAP10-10	P60014	251 aa		3.21	□□□□□ -1.9
RBM39-233	ENST00000482563	ZNF563	Q8TA94	476 aa		3.21	□□□□□ -1.9
RBM39-233	ENST00000482563		Q96NJ1	140 aa		3.21	□□□□□ -1.9
RBM39-233	ENST00000482563	CCL19	Q99731	98 aa		3.21	□□□□□ -1.9
RBM39-233	ENST00000482563	LCE3D	Q9BYE3	92 aa		3.21	□□□□□ -1.9
RBM39-233	ENST00000482563	TMEM14B	Q9NUH8	114 aa		3.21	□□□□□ -1.9
RBM39-233	ENST00000482563	NLRP1	Q9C000	1473 aa		3.21	□□□□□ -1.9
RBM39-233	ENST00000482563	SIPA1L3	O60292	1781 aa	Predicted RBP	3.21	□□□□□ -1.9
RBM39-233	ENST00000482563	KRTAP6-3	Q3LI67	103 aa		3.2	□□□□□ -1.9
RBM39-233	ENST00000482563		Q86TA4	180 aa		3.2	□□□□□ -1.9
RBM39-233	ENST00000482563	WFDC6	Q9BQY6	131 aa		3.2	□□□□□ -1.9
RBM39-233	ENST00000482563	SUPT6H	Q7KZ85	1726 aa	Known RBP	3.2	□□□□□ -1.9
RBM39-233	ENST00000482563		E9PCH4	1651 aa		3.2	□□□□□ -1.9
RBM39-233	ENST00000482563	PMCHL1	Q16048	86 aa		3.19	□□□□□ -1.9
RBM39-233	ENST00000482563	ARL2-SNX15	V9GYD0	113 aa		3.19	□□□□□ -1.9
RBM39-233	ENST00000482563	SCN7A	Q01118	1682 aa		3.19	□□□□□ -1.9
RBM39-233	ENST00000482563	ERICH3	Q5RHP9	1530 aa		3.19	□□□□□ -1.9
RBM39-233	ENST00000482563	LOC285095	A0A1B0GVY8	99 aa		3.19	□□□□□ -1.9
RBM39-233	ENST00000482563	KRTAP12-1	P59990	96 aa		3.18	□□□□□ -1.9
RBM39-233	ENST00000482563	BVES-AS1	Q5T3Y7	98 aa		3.18	□□□□□ -1.9
RBM39-233	ENST00000482563	TMEM170B	Q5T4T1	132 aa		3.18	□□□□□ -1.9
RBM39-233	ENST00000482563	PP632	Q6XCG6	107 aa		3.18	□□□□□ -1.9
RBM39-233	ENST00000482563	AMELX	Q99217	191 aa		3.18	□□□□□ -1.9
RBM39-233	ENST00000482563	MED13L	Q71F56	2210 aa		3.17	□□□□□ -1.9
RBM39-233	ENST00000482563	MAP3K4	Q9Y6R4	1608 aa		3.17	□□□□□ -1.9
RBM39-233	ENST00000482563	IGLC2	P0DOY2	106 aa		3.17	□□□□□ -1.9
RBM39-233	ENST00000482563	IGLC3	P0DOY3	106 aa		3.17	□□□□□ -1.9
RBM39-233	ENST00000482563		Q6ZQY7	126 aa		3.17	□□□□□ -1.9
RBM39-233	ENST00000482563	LINC01600	Q96MT4	127 aa		3.17	□□□□□ -1.9
RBM39-233	ENST00000482563		M0R135	149 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563		Q5BKY6	102 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563		R4GMQ9	66 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563	CCDC141	Q6ZP82	1450 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563	MYH4	Q9Y623	1939 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563	FAM223B	A6NKX1	122 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563		F8VRH5	84 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563	CAV3	P56539	151 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563	CFAP126	Q5VTH2	177 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563	PPP1R1C	Q8WVI7	109 aa		3.16	□□□□□ -1.9
RBM39-233	ENST00000482563	BCE1	O60756	84 aa		3.15	□□□□□ -1.91
RBM39-233	ENST00000482563	LINC01558	Q9Y6Z2	57 aa		3.15	□□□□□ -1.91
RBM39-233	ENST00000482563	PEAK1	Q9H792	1746 aa		3.15	□□□□□ -1.91
RBM39-233	ENST00000482563		F2Z2F3	143 aa		3.14	□□□□□ -1.91
RBM39-233	ENST00000482563	ZNF236	Q9UL36	1845 aa		3.13	□□□□□ -1.91
RBM39-233	ENST00000482563		F8WEM9	126 aa		3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	PSENEN	Q9NZ42	101 aa		3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	NEXMIF	Q5QGS0	1516 aa		3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	MYO7B	Q6PIF6	2116 aa		3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	COL5A1	P20908	1838 aa	Predicted RBP	3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	TRGV1	A0A0A0MS02	117 aa		3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	SAA2	P0DJI9	122 aa	Predicted RBP	3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	ZCCHC13	Q8WW36	166 aa	Known RBP	3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	PDCD11	Q14690	1871 aa	Known RBP	3.13	□□□□□ -1.91
RBM39-233	ENST00000482563	KIF20B	Q96Q89	1820 aa		3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	ADAMTS12	P58397	1594 aa		3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	ZMYM4	Q5VZL5	1548 aa		3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	SMIM31	A0A1B0GVY4	71 aa		3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	SNRPF	P62306	86 aa	Known RBP	3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	PSMG4	Q5JS54	123 aa		3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	SMCO4	Q9NRQ5	59 aa		3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	ABCA1	O95477	2261 aa		3.12	□□□□□ -1.91
RBM39-233	ENST00000482563	ZNF815P	A8K554	130 aa		3.11	□□□□□ -1.91
RBM39-233	ENST00000482563		H3BUT2	72 aa		3.11	□□□□□ -1.91
RBM39-233	ENST00000482563	COL4A4	P53420	1690 aa	Predicted RBP	3.11	□□□□□ -1.91
RBM39-233	ENST00000482563	NCOA6	Q14686	2063 aa	Predicted RBP	3.11	□□□□□ -1.91
RBM39-233	ENST00000482563		M0R3E3	92 aa		3.1	□□□□□ -1.91
RBM39-233	ENST00000482563	DEFA5	Q01523	94 aa		3.1	□□□□□ -1.91
RBM39-233	ENST00000482563	ZNF137P	P52743	207 aa		3.1	□□□□□ -1.91
RBM39-233	ENST00000482563	TRAV1-2	A0A0B4J238	106 aa		3.09	□□□□□ -1.91
RBM39-233	ENST00000482563	CACNA1B	Q00975	2339 aa		3.09	□□□□□ -1.91
RBM39-233	ENST00000482563	KIF21A	Q7Z4S6	1674 aa		3.08	□□□□□ -1.92
RBM39-233	ENST00000482563	BAGE2	Q86Y30	109 aa		3.08	□□□□□ -1.92
RBM39-233	ENST00000482563	PRR15L	Q9BU68	103 aa		3.08	□□□□□ -1.92
RBM39-233	ENST00000482563	BTAF1	O14981	1849 aa		3.08	□□□□□ -1.92
RBM39-233	ENST00000482563	CLIP1	P30622	1438 aa		3.08	□□□□□ -1.92
RBM39-233	ENST00000482563	CTXND1	A0A1B0GTU2	59 aa		3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	PDCD5	O14737	125 aa		3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	CFD	P00746	253 aa	Predicted RBP	3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	LINC00643	Q86TS7	51 aa		3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	BAGE3	Q86Y29	109 aa		3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	PPRC1	Q5VV67	1664 aa	Known RBP	3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	ABCA8	O94911	1581 aa		3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	KANTR	A0A1W2PQU2	76 aa		3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	IQSEC2	Q5JU85	1478 aa		3.07	□□□□□ -1.92
RBM39-233	ENST00000482563	IFT172	Q9UG01	1749 aa		3.06	□□□□□ -1.92
RBM39-233	ENST00000482563	C7orf77	A4D0Y5	90 aa		3.06	□□□□□ -1.92
RBM39-233	ENST00000482563	UQCR11	O14957	56 aa		3.06	□□□□□ -1.92
RBM39-233	ENST00000482563	HMGN2	P05204	90 aa	Known RBP	3.06	□□□□□ -1.92
RBM39-233	ENST00000482563	SMIM11A	P58511	58 aa		3.06	□□□□□ -1.92
RBM39-233	ENST00000482563	CFAP74	Q9C0B2	1584 aa		3.06	□□□□□ -1.92
RBM39-233	ENST00000482563	IQCF6	A8MYZ5	107 aa		3.05	□□□□□ -1.92
RBM39-233	ENST00000482563	FDCSP	Q8NFU4	85 aa		3.05	□□□□□ -1.92
RBM39-233	ENST00000482563	LAMA4	Q16363	1823 aa		3.05	□□□□□ -1.92

Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms