RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 J3QQQ9 107 aa12.02□□□□□ -0.49
SMARCD3-206ENST00000470588 FHL2Q14192 279 aa12.02□□□□□ -0.49
SMARCD3-206ENST00000470588 DGAT2L7PQ6IED9 249 aa12.02□□□□□ -0.49
SMARCD3-206ENST00000470588 PLEKHB2Q96CS7 222 aa12.02□□□□□ -0.49
SMARCD3-206ENST00000470588 X6R8D5 127 aa12.02□□□□□ -0.49
SMARCD3-206ENST00000470588 LGALS3P17931 250 aaKnown RBP12.01□□□□□ -0.49
SMARCD3-206ENST00000470588 SCGB1D4Q6XE38 83 aa12.01□□□□□ -0.49
SMARCD3-206ENST00000470588 NTM-AS1Q6ZSK4 140 aa12.01□□□□□ -0.49
SMARCD3-206ENST00000470588 CSDC2Q9Y534 153 aaKnown RBP12.01□□□□□ -0.49
SMARCD3-206ENST00000470588 Q6ZUT4 128 aa12□□□□□ -0.49
SMARCD3-206ENST00000470588 SBSPONQ8IVN8 264 aa12□□□□□ -0.49
SMARCD3-206ENST00000470588 VWFP04275 2813 aa12□□□□□ -0.49
SMARCD3-206ENST00000470588 TSPEAR-AS2P59090 65 aa11.99□□□□□ -0.49
SMARCD3-206ENST00000470588 OXLD1Q5BKU9 147 aa11.99□□□□□ -0.49
SMARCD3-206ENST00000470588 CCL25O15444 150 aa11.98□□□□□ -0.49
SMARCD3-206ENST00000470588 TIRAPP58753 221 aa11.98□□□□□ -0.49
SMARCD3-206ENST00000470588 RNASE13Q5GAN3 156 aaKnown RBP11.98□□□□□ -0.49
SMARCD3-206ENST00000470588 AMMECR1LQ6DCA0 310 aa11.98□□□□□ -0.49
SMARCD3-206ENST00000470588 A0A0J9YY99 117 aa11.97□□□□□ -0.49
SMARCD3-206ENST00000470588 H7C423 109 aa11.97□□□□□ -0.49
SMARCD3-206ENST00000470588 K7EP13 123 aa11.97□□□□□ -0.49
SMARCD3-206ENST00000470588 UBE2D1P51668 147 aa11.97□□□□□ -0.49
SMARCD3-206ENST00000470588 RAB37Q96AX2 223 aa11.97□□□□□ -0.49
SMARCD3-206ENST00000470588 TMEM243Q9BU79 118 aa11.97□□□□□ -0.49
SMARCD3-206ENST00000470588 FBN1P35555 2871 aaKnown RBP11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 DEFB130BP0DP73 79 aa11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 DEFB130AP0DP74 79 aa11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 EGFEM1PQ0D2K5 195 aa11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 SRSF9Q13242 221 aaKnown RBP eCLIP11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 OR5A1Q8NGJ0 315 aa11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 SPANXB1Q9NS25 103 aaPredicted RBP11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 NHP2Q9NX24 153 aaKnown RBP11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 NOTCH3Q9UM47 2321 aa11.96□□□□□ -0.49
SMARCD3-206ENST00000470588 LOC100131303A0A0U1RQF7 123 aa11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 LYRM9A8MSI8 78 aa11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 H3BUT2 72 aa11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 LINC00694P0DN24 101 aa11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 C12orf74Q32Q52 190 aa11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 GEMIN7Q9H840 131 aaKnown RBP11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 IGHV4-30-4P0DP06 118 aa11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 FAM19A3Q7Z5A8 133 aa11.95□□□□□ -0.5
SMARCD3-206ENST00000470588 IGHV1-58A0A0C4DH39 117 aa11.94□□□□□ -0.5
SMARCD3-206ENST00000470588 A0A1B0GWB2 263 aa11.94□□□□□ -0.5
SMARCD3-206ENST00000470588 TMEM238LA0A1B0GVL6 79 aa11.93□□□□□ -0.5
SMARCD3-206ENST00000470588 A6NJY4 79 aa11.93□□□□□ -0.5
SMARCD3-206ENST00000470588 UBE2L6O14933 153 aa11.93□□□□□ -0.5
SMARCD3-206ENST00000470588 IGHV3-30-3P0DP02 117 aa11.93□□□□□ -0.5
SMARCD3-206ENST00000470588 TMEM101Q96IK0 257 aa11.93□□□□□ -0.5
SMARCD3-206ENST00000470588 CDC42SE2Q9NRR3 84 aa11.93□□□□□ -0.5
SMARCD3-206ENST00000470588 IGLV5-45A0A087WSX0 123 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 KRTAP10-11P60412 298 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 IGHV3-64A0A075B6Q5 118 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 GAGE10A6NGK3 116 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 HERVK_113P63121 156 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 DEFB135Q30KP9 77 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 SAMD5Q5TGI4 173 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 VSIG2Q96IQ7 327 aa11.92□□□□□ -0.5
SMARCD3-206ENST00000470588 A0A1W2PPM0 123 aa11.91□□□□□ -0.5
SMARCD3-206ENST00000470588 FAM222AQ5U5X8 452 aa11.91□□□□□ -0.5
SMARCD3-206ENST00000470588 GTF2H5Q6ZYL4 71 aa11.91□□□□□ -0.5
SMARCD3-206ENST00000470588 STAB1Q9NY15 2570 aa11.91□□□□□ -0.5
SMARCD3-206ENST00000470588 TRBV6-8A0A0A6YYG3 113 aa11.9□□□□□ -0.5
SMARCD3-206ENST00000470588 K7ERJ3 54 aa11.9□□□□□ -0.5
SMARCD3-206ENST00000470588 MIFP14174 115 aa11.9□□□□□ -0.51
SMARCD3-206ENST00000470588 LINC00242Q5T6M2 205 aa11.9□□□□□ -0.51
SMARCD3-206ENST00000470588 PRO0255Q9UI72 69 aa11.9□□□□□ -0.51
SMARCD3-206ENST00000470588 TRAV8-3A0A0A6YYJ7 113 aa11.89□□□□□ -0.51
SMARCD3-206ENST00000470588 IGLL5B9A064 214 aa11.89□□□□□ -0.51
SMARCD3-206ENST00000470588 IGHV3-30P01768 117 aa11.89□□□□□ -0.51
SMARCD3-206ENST00000470588 IGHV3-30-5P0DP03 117 aa11.89□□□□□ -0.51
SMARCD3-206ENST00000470588 FABP2P12104 132 aa11.89□□□□□ -0.51
SMARCD3-206ENST00000470588 NAA38Q9BRA0 125 aaKnown RBP11.89□□□□□ -0.51
SMARCD3-206ENST00000470588 CDKN2A-AS1Q9UH64 79 aa11.89□□□□□ -0.51
SMARCD3-206ENST00000470588 IGHV4-28A0A0C4DH34 117 aa11.88□□□□□ -0.51
SMARCD3-206ENST00000470588 A8MZ25 164 aa11.88□□□□□ -0.51
SMARCD3-206ENST00000470588 G3V4G9 280 aa11.88□□□□□ -0.51
SMARCD3-206ENST00000470588 SPINK8P0C7L1 97 aa11.88□□□□□ -0.51
SMARCD3-206ENST00000470588 COX6A2Q02221 97 aa11.88□□□□□ -0.51
SMARCD3-206ENST00000470588 ATP6V0E2Q8NHE4 81 aa11.88□□□□□ -0.51
SMARCD3-206ENST00000470588 RNF183Q96D59 192 aa11.88□□□□□ -0.51
SMARCD3-206ENST00000470588 A0A0J9YXY3 114 aa11.87□□□□□ -0.51
SMARCD3-206ENST00000470588 K7EP34 96 aa11.87□□□□□ -0.51
SMARCD3-206ENST00000470588 GYPEP15421 78 aa11.87□□□□□ -0.51
SMARCD3-206ENST00000470588 C10orf126Q8N4M7 172 aa11.87□□□□□ -0.51
SMARCD3-206ENST00000470588 NDUFA12Q9UI09 145 aa11.87□□□□□ -0.51
SMARCD3-206ENST00000470588 TMEM238C9JI98 176 aa11.86□□□□□ -0.51
SMARCD3-206ENST00000470588 GAGE6Q13070 117 aa11.86□□□□□ -0.51
SMARCD3-206ENST00000470588 TRAV13-1A0A0B4J241 112 aa11.85□□□□□ -0.51
SMARCD3-206ENST00000470588 ZFAND6Q6FIF0 208 aa11.85□□□□□ -0.51
SMARCD3-206ENST00000470588 Q8NAQ8 132 aa11.85□□□□□ -0.51
SMARCD3-206ENST00000470588 TRRAPQ9Y4A5 3859 aa11.85□□□□□ -0.51
SMARCD3-206ENST00000470588 COL6A5A8TX70 2615 aa11.85□□□□□ -0.51
SMARCD3-206ENST00000470588 PAX4O43316 350 aa11.84□□□□□ -0.51
SMARCD3-206ENST00000470588 DAD1P61803 113 aa11.84□□□□□ -0.51
SMARCD3-206ENST00000470588 CHCHD5Q9BSY4 110 aa11.84□□□□□ -0.51
SMARCD3-206ENST00000470588 SPCS1Q9Y6A9 102 aa11.84□□□□□ -0.51
SMARCD3-206ENST00000470588 IGLV5-39A0A0G2JS06 123 aa11.84□□□□□ -0.51
SMARCD3-206ENST00000470588 DEFB4AO15263 64 aa11.83□□□□□ -0.52
SMARCD3-206ENST00000470588 SPART-AS1P0CW21 52 aa11.83□□□□□ -0.52
SMARCD3-206ENST00000470588 MDFIQ99750 246 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms