RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 LINC00614P0C842 121 aa9.87□□□□□ -0.83
COL9A3-209ENST00000469852 BTF3P20290 206 aaKnown RBP9.87□□□□□ -0.83
COL9A3-209ENST00000469852 LINC00310P59036 64 aa9.87□□□□□ -0.83
COL9A3-209ENST00000469852 PMCHL1Q16048 86 aa9.87□□□□□ -0.83
COL9A3-209ENST00000469852 TMEM18Q96B42 140 aa9.87□□□□□ -0.83
COL9A3-209ENST00000469852 TMEM101Q96IK0 257 aa9.87□□□□□ -0.83
COL9A3-209ENST00000469852 TIMM21Q9BVV7 248 aa9.87□□□□□ -0.83
COL9A3-209ENST00000469852 CRPP02741 224 aa9.86□□□□□ -0.83
COL9A3-209ENST00000469852 ZNF664Q8N3J9 261 aa9.86□□□□□ -0.83
COL9A3-209ENST00000469852 AP5S1Q9NUS5 200 aa9.86□□□□□ -0.83
COL9A3-209ENST00000469852 CYSLTR1Q9Y271 337 aa9.86□□□□□ -0.83
COL9A3-209ENST00000469852 CSDC2Q9Y534 153 aaKnown RBP9.86□□□□□ -0.83
COL9A3-209ENST00000469852 HERC2O95714 4834 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 IGLV10-54A0A075B6I4 117 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 TRAV8-3A0A0A6YYJ7 113 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BKO60814 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BJP06899 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BOP23527 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BBP33778 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BDP58876 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BCP62807 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 Q0VG73 95 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST2H2BEQ16778 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.85□□□□□ -0.83
COL9A3-209ENST00000469852 DGAT2L7PQ6IED9 249 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BHQ93079 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 TOMM6Q96B49 74 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BNQ99877 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 HIST1H2BMQ99879 126 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 SPANXA1Q9NS26 97 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 PKD1P98161 4303 aa9.85□□□□□ -0.83
COL9A3-209ENST00000469852 IGLV4-3A0A075B6K6 122 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 IGKV2D-24A0A075B6R9 120 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 TNP2Q05952 138 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 KRTAP26-1Q6PEX3 210 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 NFE4Q86UQ8 179 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 BAGE3Q86Y29 109 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 MAPKAPK5-AS1Q8N8E1 139 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 PYGO1Q9Y3Y4 419 aa9.84□□□□□ -0.83
COL9A3-209ENST00000469852 IGIPA6NJ69 53 aa9.83□□□□□ -0.84
COL9A3-209ENST00000469852 NUPR1O60356 82 aa9.83□□□□□ -0.84
COL9A3-209ENST00000469852 SERF1AO75920 110 aa9.83□□□□□ -0.84
COL9A3-209ENST00000469852 MIAQ16674 131 aa9.83□□□□□ -0.84
COL9A3-209ENST00000469852 ZC2HC1BQ5TFG8 222 aa9.83□□□□□ -0.84
COL9A3-209ENST00000469852 RAB5BP61020 215 aa9.82□□□□□ -0.84
COL9A3-209ENST00000469852 MRPS36P82909 103 aaKnown RBP9.82□□□□□ -0.84
COL9A3-209ENST00000469852 SMAGPQ0VAQ4 97 aa9.82□□□□□ -0.84
COL9A3-209ENST00000469852 HECTD4Q9Y4D8 3996 aa9.81□□□□□ -0.84
COL9A3-209ENST00000469852 LINC00959A0A1B0GUT2 108 aa9.81□□□□□ -0.84
COL9A3-209ENST00000469852 WFDC2Q14508 124 aa9.81□□□□□ -0.84
COL9A3-209ENST00000469852 LINC00173Q6ZV60 143 aa9.81□□□□□ -0.84
COL9A3-209ENST00000469852 CHCHD1Q96BP2 118 aaKnown RBP9.81□□□□□ -0.84
COL9A3-209ENST00000469852 C1orf43Q9BWL3 253 aa9.81□□□□□ -0.84
COL9A3-209ENST00000469852 PRSS29PA6NIE9 313 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 HBDP02042 147 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 PDZD11Q5EBL8 140 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 FAM19A2Q8N3H0 131 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 RMI2Q96E14 147 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 TMEM141Q96I45 108 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 SCGB3A1Q96QR1 104 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 TIMM17AQ99595 171 aa9.8□□□□□ -0.84
COL9A3-209ENST00000469852 TRAV13-1A0A0B4J241 112 aa9.79□□□□□ -0.84
COL9A3-209ENST00000469852 TRAV8-4A0A0B4J246 113 aa9.79□□□□□ -0.84
COL9A3-209ENST00000469852 PSCAO43653 123 aa9.79□□□□□ -0.84
COL9A3-209ENST00000469852 G0S2P27469 103 aa9.79□□□□□ -0.84
COL9A3-209ENST00000469852 ERASQ7Z444 233 aa9.79□□□□□ -0.84
COL9A3-209ENST00000469852 CHCHD10Q8WYQ3 142 aaPredicted RBP9.79□□□□□ -0.84
COL9A3-209ENST00000469852 TM2D2Q9BX73 214 aa9.79□□□□□ -0.84
COL9A3-209ENST00000469852 LRCOL1A6NCL2 159 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 GAGE12HA6NDE8 117 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 IFITM10A6NMD0 228 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 C1orf196B1AJZ1 125 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 LECT2O14960 151 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 CCL25O15444 150 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 HSBP1O75506 76 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 LINC00336Q6ZUF6 198 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 BAALCQ8WXS3 180 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 AMELXQ99217 191 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 PCLOQ9Y6V0 5065 aa9.78□□□□□ -0.84
COL9A3-209ENST00000469852 DNAH5Q8TE73 4624 aa9.77□□□□□ -0.84
COL9A3-209ENST00000469852 XCL1P47992 114 aa9.77□□□□□ -0.85
COL9A3-209ENST00000469852 A0A087WTM6 91 aa9.76□□□□□ -0.85
COL9A3-209ENST00000469852 A0A1B0GVY2 172 aa9.76□□□□□ -0.85
COL9A3-209ENST00000469852 NPSP0C0P6 89 aa9.76□□□□□ -0.85
COL9A3-209ENST00000469852 FOXI1Q12951 378 aa9.76□□□□□ -0.85
COL9A3-209ENST00000469852 SS18Q15532 418 aa9.76□□□□□ -0.85
COL9A3-209ENST00000469852 TEX43Q6ZNM6 134 aa9.76□□□□□ -0.85
COL9A3-209ENST00000469852 COX11Q9Y6N1 276 aa9.76□□□□□ -0.85
COL9A3-209ENST00000469852 LINC01549A6NIU2 74 aa9.75□□□□□ -0.85
COL9A3-209ENST00000469852 UBE2D1P51668 147 aa9.75□□□□□ -0.85
COL9A3-209ENST00000469852 Q6ZN92 141 aa9.75□□□□□ -0.85
COL9A3-209ENST00000469852 VCX2Q9H322 139 aa9.75□□□□□ -0.85
COL9A3-209ENST00000469852 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.74□□□□□ -0.85
COL9A3-209ENST00000469852 FUSP35637 526 aaKnown RBP eCLIP9.74□□□□□ -0.85
COL9A3-209ENST00000469852 NDUFA6P56556 154 aa9.74□□□□□ -0.85
COL9A3-209ENST00000469852 KIAA1109Q2LD37 5005 aa9.74□□□□□ -0.85
COL9A3-209ENST00000469852 PKHD1P08F94 4074 aa9.73□□□□□ -0.85
COL9A3-209ENST00000469852 COX6A2Q02221 97 aa9.73□□□□□ -0.85
COL9A3-209ENST00000469852 COA6Q5JTJ3 125 aaKnown RBP9.73□□□□□ -0.85
COL9A3-209ENST00000469852 LINC00242Q5T6M2 205 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms