RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TSSC4Q9Y5U2 329 aaPredicted RBP13.69□□□□□ -0.22
VIM-203ENST00000469543 TRRAPQ9Y4A5 3859 aa13.69□□□□□ -0.22
VIM-203ENST00000469543 A0A0J9YXY3 114 aa13.68□□□□□ -0.22
VIM-203ENST00000469543 ZNF418Q8TF45 676 aaPredicted RBP13.68□□□□□ -0.22
VIM-203ENST00000469543 PRSS2P07478 247 aa13.68□□□□□ -0.22
VIM-203ENST00000469543 COX6A2Q02221 97 aa13.68□□□□□ -0.22
VIM-203ENST00000469543 PTH2Q96A98 100 aa13.68□□□□□ -0.22
VIM-203ENST00000469543 SMCPP49901 116 aaPredicted RBP13.67□□□□□ -0.22
VIM-203ENST00000469543 CDKN2A-AS1Q9UH64 79 aa13.67□□□□□ -0.22
VIM-203ENST00000469543 NTM-AS1Q6ZSK4 140 aa13.67□□□□□ -0.22
VIM-203ENST00000469543 ATRQ13535 2644 aa13.66□□□□□ -0.22
VIM-203ENST00000469543 DAND5Q8N907 189 aa13.66□□□□□ -0.22
VIM-203ENST00000469543 GAGE12JA6NER3 117 aa13.66□□□□□ -0.22
VIM-203ENST00000469543 TCL1BO95988 128 aa13.66□□□□□ -0.22
VIM-203ENST00000469543 GAGE4Q13068 117 aa13.66□□□□□ -0.22
VIM-203ENST00000469543 GAGE5Q13069 117 aa13.66□□□□□ -0.22
VIM-203ENST00000469543 PIK3CD-AS1Q5SR53 167 aa13.66□□□□□ -0.22
VIM-203ENST00000469543 TRAV25A0A0B4J276 109 aa13.65□□□□□ -0.22
VIM-203ENST00000469543 LOC100131303A0A0U1RQF7 123 aa13.65□□□□□ -0.22
VIM-203ENST00000469543 PRO1854Q9UHT4 67 aa13.65□□□□□ -0.22
VIM-203ENST00000469543 UBE2D3P61077 147 aa13.65□□□□□ -0.22
VIM-203ENST00000469543 UBE2D2P62837 147 aa13.65□□□□□ -0.22
VIM-203ENST00000469543 DGAT2L7PQ6IED9 249 aa13.65□□□□□ -0.22
VIM-203ENST00000469543 LITAFQ99732 161 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 IGHV1-58A0A0C4DH39 117 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 GAGE7O76087 117 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 RNASE1P07998 156 aaKnown RBP13.64□□□□□ -0.23
VIM-203ENST00000469543 GAGE12FP0CL80 117 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 GAGE12GP0CL81 117 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 GAGE12IP0CL82 117 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 IL17DQ8TAD2 202 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 VSIG2Q96IQ7 327 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 NDUFA12Q9UI09 145 aa13.64□□□□□ -0.23
VIM-203ENST00000469543 SPANXA1Q9NS26 97 aa13.63□□□□□ -0.23
VIM-203ENST00000469543 GEMIN7Q9H840 131 aaKnown RBP13.63□□□□□ -0.23
VIM-203ENST00000469543 C19orf73Q9NVV2 129 aa13.63□□□□□ -0.23
VIM-203ENST00000469543 SCGB1C2P0DMR2 95 aa13.62□□□□□ -0.23
VIM-203ENST00000469543 ZNF625Q96I27 306 aaPredicted RBP13.62□□□□□ -0.23
VIM-203ENST00000469543 NSD1Q96L73 2696 aaPredicted RBP13.62□□□□□ -0.23
VIM-203ENST00000469543 TRAV13-1A0A0B4J241 112 aa13.62□□□□□ -0.23
VIM-203ENST00000469543 A0A0U1RRA0 63 aa13.62□□□□□ -0.23
VIM-203ENST00000469543 TINCRA0A1B0GVN0 87 aa13.62□□□□□ -0.23
VIM-203ENST00000469543 PLAC8L1A1L4L8 177 aa13.62□□□□□ -0.23
VIM-203ENST00000469543 TMEM263Q8WUH6 116 aaKnown RBP13.62□□□□□ -0.23
VIM-203ENST00000469543 KRTAP10-3P60369 221 aa13.61□□□□□ -0.23
VIM-203ENST00000469543 DNAJC30Q96LL9 226 aa13.61□□□□□ -0.23
VIM-203ENST00000469543 CLUHP3Q96NS8 147 aa13.61□□□□□ -0.23
VIM-203ENST00000469543 IGLV1-51P01701 117 aa13.6□□□□□ -0.23
VIM-203ENST00000469543 SPATA3Q8NHX4 192 aa13.6□□□□□ -0.23
VIM-203ENST00000469543 TRGV2A0A075B6R0 118 aa13.59□□□□□ -0.23
VIM-203ENST00000469543 J3QKU1 62 aa13.59□□□□□ -0.23
VIM-203ENST00000469543 K7EQD1 137 aa13.59□□□□□ -0.23
VIM-203ENST00000469543 TMEM101Q96IK0 257 aa13.59□□□□□ -0.23
VIM-203ENST00000469543 TMEM238C9JI98 176 aa13.58□□□□□ -0.23
VIM-203ENST00000469543 IGHV3-33P01772 117 aa13.58□□□□□ -0.23
VIM-203ENST00000469543 TEX29Q8N6K0 151 aa13.58□□□□□ -0.23
VIM-203ENST00000469543 HIVEP1P15822 2718 aa13.58□□□□□ -0.24
VIM-203ENST00000469543 RPL36AP83881 106 aaKnown RBP13.58□□□□□ -0.24
VIM-203ENST00000469543 LINC00242Q5T6M2 205 aa13.58□□□□□ -0.24
VIM-203ENST00000469543 RPL36ALQ969Q0 106 aaKnown RBP13.58□□□□□ -0.24
VIM-203ENST00000469543 C16orf95Q9H693 158 aa13.57□□□□□ -0.24
VIM-203ENST00000469543 CRYBA4P53673 196 aa13.57□□□□□ -0.24
VIM-203ENST00000469543 CSNK1G2-AS1Q8NCQ2 148 aa13.57□□□□□ -0.24
VIM-203ENST00000469543 GTSF1LQ9H1H1 148 aa13.57□□□□□ -0.24
VIM-203ENST00000469543 HILS1P60008 231 aa13.56□□□□□ -0.24
VIM-203ENST00000469543 Q1RN00 199 aa13.56□□□□□ -0.24
VIM-203ENST00000469543 ERG28Q9UKR5 140 aa13.55□□□□□ -0.24
VIM-203ENST00000469543 TRAV4A0A0B4J268 109 aa13.55□□□□□ -0.24
VIM-203ENST00000469543 IGKV3OR2-268A0A0C4DH90 116 aa13.54□□□□□ -0.24
VIM-203ENST00000469543 ZFAND6Q6FIF0 208 aa13.53□□□□□ -0.24
VIM-203ENST00000469543 DAZ2Q13117 558 aaKnown RBP13.52□□□□□ -0.24
VIM-203ENST00000469543 GAGE12HA6NDE8 117 aa13.52□□□□□ -0.25
VIM-203ENST00000469543 DEFB130BP0DP73 79 aa13.52□□□□□ -0.25
VIM-203ENST00000469543 DEFB130AP0DP74 79 aa13.52□□□□□ -0.25
VIM-203ENST00000469543 Q9H8V8 135 aa13.52□□□□□ -0.25
VIM-203ENST00000469543 FOXI1Q12951 378 aa13.51□□□□□ -0.25
VIM-203ENST00000469543 CDC42SE2Q9NRR3 84 aa13.51□□□□□ -0.25
VIM-203ENST00000469543 TEP1Q99973 2627 aaKnown RBP13.51□□□□□ -0.25
VIM-203ENST00000469543 A0A0B4J2C4 111 aa13.5□□□□□ -0.25
VIM-203ENST00000469543 DAZ4Q86SG3 579 aaKnown RBP13.5□□□□□ -0.25
VIM-203ENST00000469543 CARD19Q96LW7 228 aa13.5□□□□□ -0.25
VIM-203ENST00000469543 DAZ3Q9NR90 486 aaKnown RBP13.5□□□□□ -0.25
VIM-203ENST00000469543 TRGV4A0A0C4DH28 118 aa13.5□□□□□ -0.25
VIM-203ENST00000469543 SBSPONQ8IVN8 264 aa13.5□□□□□ -0.25
VIM-203ENST00000469543 C16orf74Q96GX8 76 aa13.5□□□□□ -0.25
VIM-203ENST00000469543 TRBV10-1A0A0K0K1A3 114 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 C9JAW5 83 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 TIRAPP58753 221 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 SMAGPQ0VAQ4 97 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 IGLV5-45A0A087WSX0 123 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 TRIAP1O43715 76 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 MIAQ16674 131 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 C1QTNF4Q9BXJ3 329 aa13.49□□□□□ -0.25
VIM-203ENST00000469543 SMIM1B2RUZ4 78 aa13.48□□□□□ -0.25
VIM-203ENST00000469543 LY6G6DO95868 133 aa13.48□□□□□ -0.25
VIM-203ENST00000469543 GAGE6Q13070 117 aa13.48□□□□□ -0.25
VIM-203ENST00000469543 TRBV20-1A0A075B6N2 111 aa13.47□□□□□ -0.25
VIM-203ENST00000469543 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.47□□□□□ -0.25
VIM-203ENST00000469543 PF4P02776 101 aa13.47□□□□□ -0.25
VIM-203ENST00000469543 LINC00482Q8N8I6 264 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms