RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 CEMP1Q6PRD7 247 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-219ENST00000469439 Q6ZTC4 211 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 ERASQ7Z444 233 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 RETNQ9HD89 108 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 PYGO1Q9Y3Y4 419 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 IGKV2D-30A0A075B6S6 120 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 SMKR1H3BMG3 65 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 SERF1AO75920 110 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 P0DMU3 169 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 FAM231AP0DMU4 169 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 FAM231CP0DMU5 169 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 NANOS2P60321 138 aaKnown RBP4.07□□□□□ -1.76
SYNE1-219ENST00000469439 KRTAP10-6P60371 365 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-219ENST00000469439 SNRPEP62304 92 aaKnown RBP4.07□□□□□ -1.76
SYNE1-219ENST00000469439 C2orf66Q6UXQ4 117 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 C10orf126Q8N4M7 172 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 TOMM6Q96B49 74 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 RPL39LQ96EH5 51 aaKnown RBP4.07□□□□□ -1.76
SYNE1-219ENST00000469439 SCGB3A1Q96QR1 104 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 TIMM17AQ99595 171 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 CELA1Q9UNI1 258 aa4.07□□□□□ -1.76
SYNE1-219ENST00000469439 A0A0J9YY99 117 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 A0A1B0GUV1 79 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 C5orf52A6NGY3 159 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 IGLL5B9A064 214 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 TMEM262E9PQX1 116 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 C3orf84H3BNL1 204 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 PRSS1P07477 247 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 PMCHL1Q16048 86 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 KRTAP5-11Q6L8G4 156 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 MRPL52Q86TS9 123 aaKnown RBP4.06□□□□□ -1.76
SYNE1-219ENST00000469439 C20orf203Q8NBC4 194 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 OR5A1Q8NGJ0 315 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 RMI2Q96E14 147 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 CHCHD5Q9BSY4 110 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 VCX2Q9H322 139 aa4.06□□□□□ -1.76
SYNE1-219ENST00000469439 IGLV2-18A0A075B6J9 118 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 HSBP1L1C9JCN9 74 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 PLNP26678 52 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 MRPS36P82909 103 aaKnown RBP4.05□□□□□ -1.76
SYNE1-219ENST00000469439 TTC32Q5I0X7 151 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 PET117Q6UWS5 81 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 TEX43Q6ZNM6 134 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 SPATA12Q7Z6I5 190 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 UBE2DNLQ8IWF7 75 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 IFI27L1Q96BM0 104 aa4.05□□□□□ -1.76
SYNE1-219ENST00000469439 A0A096LPF7 62 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 TRAV12-1A0A0B4J245 112 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 TRAV8-4A0A0B4J246 113 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 PRYO14603 147 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 TSHBP01222 138 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 CRPP02741 224 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 LINC00694P0DN24 101 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 FABP4P15090 132 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 S100A12P80511 92 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 LGALS9CQ6DKI2 356 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 HIST3H2BBQ8N257 126 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 MUC7Q8TAX7 377 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 VSIG2Q96IQ7 327 aa4.04□□□□□ -1.76
SYNE1-219ENST00000469439 VWFP04275 2813 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 TRAV8-3A0A0A6YYJ7 113 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 IGHV3-38A0A0C4DH36 116 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 H3BRM9 83 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 FGF6P10767 208 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 HERVK_113P61574 105 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 PMVKQ15126 192 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 SS18Q15532 418 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 PDZD11Q5EBL8 140 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 SFTA2Q6UW10 78 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 LYPD5Q6UWN5 251 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 UPK3BQ9BT76 320 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 GEMIN7Q9H840 131 aaKnown RBP4.03□□□□□ -1.76
SYNE1-219ENST00000469439 MRPS16Q9Y3D3 137 aaKnown RBP4.03□□□□□ -1.76
SYNE1-219ENST00000469439 MUC4Q99102 2169 aa4.03□□□□□ -1.76
SYNE1-219ENST00000469439 TRRAPQ9Y4A5 3859 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 SIVA1O15304 175 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 KRTDAPP60985 99 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 HERVK_113P63121 156 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 LINC01556Q5JQF7 62 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 NFE4Q86UQ8 179 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 ZNF664Q8N3J9 261 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 MPLKIPQ8TAP9 179 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 HIST1H2BLQ99880 126 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 TM2D2Q9BX73 214 aa4.02□□□□□ -1.77
SYNE1-219ENST00000469439 IGIPA6NJ69 53 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 IFITM10A6NMD0 228 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 F8VRH5 84 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 SYS1-DBNDD2H3BUS1 97 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 DPM2O94777 84 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 APOMO95445 188 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 SCGB1D1O95968 90 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 ANGP03950 147 aaKnown RBP4.01□□□□□ -1.77
SYNE1-219ENST00000469439 MIAQ16674 131 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 CFAP161Q6P656 301 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 FAM19A2Q8N3H0 131 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 OR10D4PQ8NGN7 298 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 CDC42SE2Q9NRR3 84 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 UBE2D4Q9Y2X8 147 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 NOTCH1P46531 2555 aa4.01□□□□□ -1.77
SYNE1-219ENST00000469439 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms