RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 DEFB113Q30KQ7 82 aa7.63□□□□□ -1.19
PTPRE-205ENST00000463727 MUC4Q99102 2169 aa7.63□□□□□ -1.19
PTPRE-205ENST00000463727 DCHS2Q6V1P9 2916 aa7.63□□□□□ -1.19
PTPRE-205ENST00000463727 MAP1AP78559 2803 aaPredicted RBP7.63□□□□□ -1.19
PTPRE-205ENST00000463727 H3BT86 120 aa7.63□□□□□ -1.19
PTPRE-205ENST00000463727 XGP55808 180 aa7.63□□□□□ -1.19
PTPRE-205ENST00000463727 DAZ2Q13117 558 aaKnown RBP7.63□□□□□ -1.19
PTPRE-205ENST00000463727 DAZ4Q86SG3 579 aaKnown RBP7.63□□□□□ -1.19
PTPRE-205ENST00000463727 DAZ3Q9NR90 486 aaKnown RBP7.63□□□□□ -1.19
PTPRE-205ENST00000463727 UBE2D4Q9Y2X8 147 aa7.63□□□□□ -1.19
PTPRE-205ENST00000463727 TEX49A0A1B0GTD5 131 aa7.62□□□□□ -1.19
PTPRE-205ENST00000463727 K7EQD1 137 aa7.62□□□□□ -1.19
PTPRE-205ENST00000463727 PF4P02776 101 aa7.62□□□□□ -1.19
PTPRE-205ENST00000463727 IGHV4-31P0DP07 118 aa7.62□□□□□ -1.19
PTPRE-205ENST00000463727 CLUHP3Q96NS8 147 aa7.62□□□□□ -1.19
PTPRE-205ENST00000463727 SMCPP49901 116 aaPredicted RBP7.62□□□□□ -1.19
PTPRE-205ENST00000463727 GAGE6Q13070 117 aa7.62□□□□□ -1.19
PTPRE-205ENST00000463727 PAX4O43316 350 aa7.62□□□□□ -1.19
PTPRE-205ENST00000463727 TRAV26-1A0A087WT03 109 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 RBMY1BA6NDE4 496 aaKnown RBP7.61□□□□□ -1.19
PTPRE-205ENST00000463727 RBMY1EA6NEQ0 496 aaKnown RBP7.61□□□□□ -1.19
PTPRE-205ENST00000463727 RBMY1DP0C7P1 496 aaKnown RBP7.61□□□□□ -1.19
PTPRE-205ENST00000463727 RBMY1A1P0DJD3 496 aaKnown RBP7.61□□□□□ -1.19
PTPRE-205ENST00000463727 RBMY1CP0DJD4 496 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 DEFB130BP0DP73 79 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 DEFB130AP0DP74 79 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 C6orf226Q5I0X4 101 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 AMELXQ99217 191 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 PRRC2AP48634 2157 aaKnown RBP7.61□□□□□ -1.19
PTPRE-205ENST00000463727 TRBV10-1A0A0K0K1A3 114 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 HERV-K104P63124 156 aa7.61□□□□□ -1.19
PTPRE-205ENST00000463727 TRAV25A0A0B4J276 109 aa7.6□□□□□ -1.19
PTPRE-205ENST00000463727 HIST2H2BDQ6DRA6 164 aa7.6□□□□□ -1.19
PTPRE-205ENST00000463727 SPANXDQ9BXN6 97 aa7.6□□□□□ -1.19
PTPRE-205ENST00000463727 C11orf68Q9H3H3 251 aaKnown RBP7.6□□□□□ -1.19
PTPRE-205ENST00000463727 SPANXCQ9NY87 97 aa7.6□□□□□ -1.19
PTPRE-205ENST00000463727 HRNRQ86YZ3 2850 aaPredicted RBP7.6□□□□□ -1.19
PTPRE-205ENST00000463727 PIK3CD-AS1Q5SR53 167 aa7.6□□□□□ -1.19
PTPRE-205ENST00000463727 Q6ZTI0 123 aa7.6□□□□□ -1.19
PTPRE-205ENST00000463727 TIRAPP58753 221 aa7.6□□□□□ -1.19
PTPRE-205ENST00000463727 PFN2P35080 140 aa7.59□□□□□ -1.19
PTPRE-205ENST00000463727 ANKRD17O75179 2603 aaKnown RBP7.59□□□□□ -1.19
PTPRE-205ENST00000463727 RS1O15537 224 aa7.59□□□□□ -1.19
PTPRE-205ENST00000463727 TRAV13-2A0A0B4J235 113 aa7.59□□□□□ -1.19
PTPRE-205ENST00000463727 NDUFA1O15239 70 aa7.59□□□□□ -1.19
PTPRE-205ENST00000463727 RBMY1FQ15415 496 aaKnown RBP7.59□□□□□ -1.19
PTPRE-205ENST00000463727 TMEM86BQ8N661 226 aa7.59□□□□□ -1.2
PTPRE-205ENST00000463727 CHCHD7Q9BUK0 85 aa7.59□□□□□ -1.2
PTPRE-205ENST00000463727 ABCA12Q86UK0 2595 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 ADAMTSL4-AS1Q5T5F5 129 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 Q6ZSN1 163 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 LINC00308Q8TCZ7 52 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 TIMM17BO60830 172 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 BAALC-AS2P0C853 105 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 RNF183Q96D59 192 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 CDIP1Q9H305 208 aa7.58□□□□□ -1.2
PTPRE-205ENST00000463727 B5MCH6 92 aa7.57□□□□□ -1.2
PTPRE-205ENST00000463727 INAFM2P0DMQ5 153 aa7.57□□□□□ -1.2
PTPRE-205ENST00000463727 GAGE2AQ6NT46 116 aa7.57□□□□□ -1.2
PTPRE-205ENST00000463727 TRAV4A0A0B4J268 109 aa7.57□□□□□ -1.2
PTPRE-205ENST00000463727 RNASE1P07998 156 aaKnown RBP7.57□□□□□ -1.2
PTPRE-205ENST00000463727 C16orf74Q96GX8 76 aa7.57□□□□□ -1.2
PTPRE-205ENST00000463727 OVOL2Q9BRP0 275 aa7.57□□□□□ -1.2
PTPRE-205ENST00000463727 Q6ZSV7 163 aa7.56□□□□□ -1.2
PTPRE-205ENST00000463727 C5orf38Q86SI9 138 aa7.56□□□□□ -1.2
PTPRE-205ENST00000463727 SS18Q15532 418 aa7.56□□□□□ -1.2
PTPRE-205ENST00000463727 CITED2Q99967 270 aaPredicted RBP7.56□□□□□ -1.2
PTPRE-205ENST00000463727 SND1-IT1Q9HBX3 110 aa7.56□□□□□ -1.2
PTPRE-205ENST00000463727 Q9UF83 564 aa7.56□□□□□ -1.2
PTPRE-205ENST00000463727 LST1O00453 97 aa7.55□□□□□ -1.2
PTPRE-205ENST00000463727 COX7A2LO14548 114 aa7.55□□□□□ -1.2
PTPRE-205ENST00000463727 H7C423 109 aa7.55□□□□□ -1.2
PTPRE-205ENST00000463727 ACYP1P07311 99 aa7.55□□□□□ -1.2
PTPRE-205ENST00000463727 MALP21145 153 aa7.55□□□□□ -1.2
PTPRE-205ENST00000463727 COX7B2Q8TF08 81 aa7.55□□□□□ -1.2
PTPRE-205ENST00000463727 ABCA2Q9BZC7 2435 aa7.55□□□□□ -1.2
PTPRE-205ENST00000463727 DNAJC9-AS1A6NH13 148 aa7.54□□□□□ -1.2
PTPRE-205ENST00000463727 ODF3L2Q3SX64 289 aa7.54□□□□□ -1.2
PTPRE-205ENST00000463727 LINC00242Q5T6M2 205 aa7.54□□□□□ -1.2
PTPRE-205ENST00000463727 MIR7-3HGQ8N6C7 128 aa7.54□□□□□ -1.2
PTPRE-205ENST00000463727 NDUFA7O95182 113 aa7.54□□□□□ -1.2
PTPRE-205ENST00000463727 ASH1LQ9NR48 2969 aaKnown RBP7.54□□□□□ -1.2
PTPRE-205ENST00000463727 CENPEQ02224 2701 aa7.54□□□□□ -1.2
PTPRE-205ENST00000463727 BEAN1Q3B7T3 259 aa7.53□□□□□ -1.2
PTPRE-205ENST00000463727 EDA2RQ9HAV5 297 aa7.53□□□□□ -1.2
PTPRE-205ENST00000463727 NDUFV3P56181 108 aaKnown RBP7.53□□□□□ -1.2
PTPRE-205ENST00000463727 HTN3P15516 51 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 COX6A2Q02221 97 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 SBSPONQ8IVN8 264 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 CFAP46Q8IYW2 2715 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 HIVEP2P31629 2446 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 XCL1P47992 114 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 LRRC75A-AS1Q8N1F1 130 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 COL12A1Q99715 3063 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 LINC00694P0DN24 101 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 KRTAP10-9P60411 292 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 SS18L2Q9UHA2 77 aa7.52□□□□□ -1.21
PTPRE-205ENST00000463727 M0QXV9 152 aa7.51□□□□□ -1.21
PTPRE-205ENST00000463727 HIST2H2BCQ6DN03 193 aa7.51□□□□□ -1.21
PTPRE-205ENST00000463727 C1orf158Q8N1D5 194 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms