RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 C20orf173Q96LM9 149 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 CRLF1O75462 422 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 C22orf34Q6ZV56 151 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 C5orf47Q569G3 176 aa5.22□□□□□ -1.57
SYNE1-216ENST00000461872 IGHV3-73A0A0B4J1V6 119 aa5.21□□□□□ -1.57
SYNE1-216ENST00000461872 UBE2D4Q9Y2X8 147 aa5.21□□□□□ -1.57
SYNE1-216ENST00000461872 IGHV4-61A0A0C4DH41 118 aa5.21□□□□□ -1.57
SYNE1-216ENST00000461872 PKD1L2Q7Z442 2459 aa5.21□□□□□ -1.58
SYNE1-216ENST00000461872 NDUFS5O43920 106 aa5.21□□□□□ -1.58
SYNE1-216ENST00000461872 RPS28P62857 69 aaKnown RBP5.21□□□□□ -1.58
SYNE1-216ENST00000461872 SELENOKQ9Y6D0 94 aa5.21□□□□□ -1.58
SYNE1-216ENST00000461872 CDIP1Q9H305 208 aa5.21□□□□□ -1.58
SYNE1-216ENST00000461872 SS18L2Q9UHA2 77 aa5.21□□□□□ -1.58
SYNE1-216ENST00000461872 RMI2Q96E14 147 aa5.2□□□□□ -1.58
SYNE1-216ENST00000461872 F8WDY8 70 aa5.2□□□□□ -1.58
SYNE1-216ENST00000461872 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.2□□□□□ -1.58
SYNE1-216ENST00000461872 IGKV2-29A2NJV5 120 aaPredicted RBP5.2□□□□□ -1.58
SYNE1-216ENST00000461872 RBM3P98179 157 aaKnown RBP5.2□□□□□ -1.58
SYNE1-216ENST00000461872 A0A1B0GW54 56 aa5.2□□□□□ -1.58
SYNE1-216ENST00000461872 RPL18AQ02543 176 aaKnown RBP5.2□□□□□ -1.58
SYNE1-216ENST00000461872 PRR9Q5T870 116 aa5.2□□□□□ -1.58
SYNE1-216ENST00000461872 XCL2Q9UBD3 114 aa5.2□□□□□ -1.58
SYNE1-216ENST00000461872 IGLV5-39A0A0G2JS06 123 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 DEFB112Q30KQ8 113 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 CDKN2A-AS1Q9UH64 79 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 LYRM9A8MSI8 78 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 MAP6D1Q9H9H5 199 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 CCL24O00175 119 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 KNCNA6PVL3 124 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 BLCAPP62952 87 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 NKAPP1Q8N9T2 125 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 CHKB-CPT1BH3BT56 60 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 FUSP35637 526 aaKnown RBP eCLIP5.19□□□□□ -1.58
SYNE1-216ENST00000461872 FAM19A3Q7Z5A8 133 aa5.19□□□□□ -1.58
SYNE1-216ENST00000461872 GNLYP22749 145 aa5.18□□□□□ -1.58
SYNE1-216ENST00000461872 PLA2G5P39877 138 aa5.18□□□□□ -1.58
SYNE1-216ENST00000461872 CHCHD7Q9BUK0 85 aa5.18□□□□□ -1.58
SYNE1-216ENST00000461872 IGHV4-38-2P0DP08 117 aa5.18□□□□□ -1.58
SYNE1-216ENST00000461872 IGHV4-59P01825 116 aa5.18□□□□□ -1.58
SYNE1-216ENST00000461872 CLEC2BQ92478 149 aa5.18□□□□□ -1.58
SYNE1-216ENST00000461872 Q6YL49 198 aa5.18□□□□□ -1.58
SYNE1-216ENST00000461872 MTORP42345 2549 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 GRNP28799 593 aaKnown RBP5.17□□□□□ -1.58
SYNE1-216ENST00000461872 JMJD1CQ15652 2540 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 Q8IZM0 81 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 MIR7-3HGQ8N6C7 128 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 CENPFP49454 3210 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 LINC00315P59091 139 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 ZNF561-AS1K7EIQ3 104 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 LECT2O14960 151 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 PRO0255Q9UI72 69 aa5.17□□□□□ -1.58
SYNE1-216ENST00000461872 HAMPP81172 84 aa5.16□□□□□ -1.58
SYNE1-216ENST00000461872 TRBV12-3P01733 135 aa5.16□□□□□ -1.58
SYNE1-216ENST00000461872 DEFB114Q30KQ6 69 aa5.16□□□□□ -1.58
SYNE1-216ENST00000461872 SHISA2Q6UWI4 295 aa5.16□□□□□ -1.58
SYNE1-216ENST00000461872 CRYGAP11844 174 aa5.16□□□□□ -1.58
SYNE1-216ENST00000461872 ZNF462Q96JM2 2506 aa5.16□□□□□ -1.58
SYNE1-216ENST00000461872 PFN2P35080 140 aa5.15□□□□□ -1.58
SYNE1-216ENST00000461872 DAD1P61803 113 aa5.15□□□□□ -1.58
SYNE1-216ENST00000461872 A0A1B0GUV1 79 aa5.15□□□□□ -1.58
SYNE1-216ENST00000461872 Q6ZS46 218 aa5.15□□□□□ -1.58
SYNE1-216ENST00000461872 NOP10Q9NPE3 64 aaKnown RBP5.15□□□□□ -1.58
SYNE1-216ENST00000461872 A0A087WZ39 114 aa5.15□□□□□ -1.59
SYNE1-216ENST00000461872 GAS8-AS1O95177 125 aa5.15□□□□□ -1.59
SYNE1-216ENST00000461872 RPL35AP18077 110 aaKnown RBP5.15□□□□□ -1.59
SYNE1-216ENST00000461872 SMIM1B2RUZ4 78 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 PRB1P04280 392 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 DEFB104AQ8WTQ1 72 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 IGHV4-30-2A0A087WSY4 118 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 A8MTW9 85 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 TRBV6-8A0A0A6YYG3 113 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 DEFB130BP0DP73 79 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 DEFB130AP0DP74 79 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 SDIM1Q6ZPB5 146 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 CDC42SE2Q9NRR3 84 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 LINC00242Q5T6M2 205 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 FN1P02751 2386 aaKnown RBP5.14□□□□□ -1.59
SYNE1-216ENST00000461872 CD164L2Q6UWJ8 174 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 USP17L23D6RBM5 183 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 LOC107984640A0A0U1RRK4 108 aa5.14□□□□□ -1.59
SYNE1-216ENST00000461872 PRB2P02812 416 aaPredicted RBP5.14□□□□□ -1.59
SYNE1-216ENST00000461872 IGHV3-38A0A0C4DH36 116 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 DIRC1Q969H9 104 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 ABCA2Q9BZC7 2435 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 ZFYVE26Q68DK2 2539 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 LINC01548A6NM66 108 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 CHD9Q3L8U1 2897 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 ZNF292O60281 2723 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 TSPEAR-AS2P59090 65 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 C1orf43Q9BWL3 253 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 C9orf66Q5T8R8 295 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-216ENST00000461872 NDUFB1O75438 58 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 DEFB113Q30KQ7 82 aa5.13□□□□□ -1.59
SYNE1-216ENST00000461872 PRB4P10163 310 aaPredicted RBP5.13□□□□□ -1.59
SYNE1-216ENST00000461872 KIR2DL5BQ8NHK3 375 aa5.12□□□□□ -1.59
SYNE1-216ENST00000461872 FAM236DA0A1B0GTK5 79 aa5.12□□□□□ -1.59
SYNE1-216ENST00000461872 FAM236CP0DP71 79 aa5.12□□□□□ -1.59
SYNE1-216ENST00000461872 SLURP1P55000 103 aa5.12□□□□□ -1.59
SYNE1-216ENST00000461872 C3orf56Q8N813 242 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms