RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 LINC01006Q8NI28 216 aa13.27□□□□□ -0.29
SEMA3B-209ENST00000456560 XGP55808 180 aa13.26□□□□□ -0.29
SEMA3B-209ENST00000456560 Q6ZUT4 128 aa13.26□□□□□ -0.29
SEMA3B-209ENST00000456560 SBSPONQ8IVN8 264 aa13.26□□□□□ -0.29
SEMA3B-209ENST00000456560 SPANXA1Q9NS26 97 aa13.26□□□□□ -0.29
SEMA3B-209ENST00000456560 UBE2D4Q9Y2X8 147 aa13.26□□□□□ -0.29
SEMA3B-209ENST00000456560 RNASE1P07998 156 aaKnown RBP13.25□□□□□ -0.29
SEMA3B-209ENST00000456560 GEMIN7Q9H840 131 aaKnown RBP13.25□□□□□ -0.29
SEMA3B-209ENST00000456560 ANKRD29Q8N6D5 301 aa13.24□□□□□ -0.29
SEMA3B-209ENST00000456560 A4D1N5 150 aa13.24□□□□□ -0.29
SEMA3B-209ENST00000456560 IGHV3-64A0A075B6Q5 118 aa13.23□□□□□ -0.29
SEMA3B-209ENST00000456560 HIVEP1P15822 2718 aa13.23□□□□□ -0.29
SEMA3B-209ENST00000456560 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.22□□□□□ -0.29
SEMA3B-209ENST00000456560 IGHV3-38A0A0C4DH36 116 aa13.22□□□□□ -0.29
SEMA3B-209ENST00000456560 IGKV2-29A2NJV5 120 aaPredicted RBP13.22□□□□□ -0.29
SEMA3B-209ENST00000456560 IGHV3OR16-12A0A075B7B8 117 aa13.21□□□□□ -0.29
SEMA3B-209ENST00000456560 RNASE13Q5GAN3 156 aaKnown RBP13.21□□□□□ -0.29
SEMA3B-209ENST00000456560 TINCRA0A1B0GVN0 87 aa13.21□□□□□ -0.29
SEMA3B-209ENST00000456560 CYSRT1A8MQ03 144 aa13.21□□□□□ -0.29
SEMA3B-209ENST00000456560 H7C2G1 150 aa13.21□□□□□ -0.29
SEMA3B-209ENST00000456560 IGHV3-30-3P0DP02 117 aa13.21□□□□□ -0.29
SEMA3B-209ENST00000456560 SLC25A20O43772 301 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 LY6G6DO95868 133 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 CMC4P56277 68 aaPredicted RBP13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 ERG28Q9UKR5 140 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 TRAV26-1A0A087WT03 109 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 C9JAW5 83 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 EIF4EBP3O60516 100 aaPredicted RBP13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 IGHV3-33P01772 117 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 MUSTN1Q8IVN3 82 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 TMEM263Q8WUH6 116 aaKnown RBP13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 TIMM21Q9BVV7 248 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 HIVEP2P31629 2446 aa13.2□□□□□ -0.3
SEMA3B-209ENST00000456560 TRGV1A0A0A0MS02 117 aa13.19□□□□□ -0.3
SEMA3B-209ENST00000456560 GIG44P09565 113 aaPredicted RBP13.19□□□□□ -0.3
SEMA3B-209ENST00000456560 A0A0B4J2C4 111 aa13.18□□□□□ -0.3
SEMA3B-209ENST00000456560 IGHV1-58A0A0C4DH39 117 aa13.18□□□□□ -0.3
SEMA3B-209ENST00000456560 A0A0J9YXY3 114 aa13.18□□□□□ -0.3
SEMA3B-209ENST00000456560 WNK1Q9H4A3 2382 aa13.18□□□□□ -0.3
SEMA3B-209ENST00000456560 TRAV8-3A0A0A6YYJ7 113 aa13.17□□□□□ -0.3
SEMA3B-209ENST00000456560 TMEM262E9PQX1 116 aa13.17□□□□□ -0.3
SEMA3B-209ENST00000456560 IGLV1-51P01701 117 aa13.17□□□□□ -0.3
SEMA3B-209ENST00000456560 Q1RN00 199 aa13.17□□□□□ -0.3
SEMA3B-209ENST00000456560 Q6ZTI0 123 aa13.17□□□□□ -0.3
SEMA3B-209ENST00000456560 NF1P21359 2839 aa13.16□□□□□ -0.3
SEMA3B-209ENST00000456560 ADARB2-AS1A8MUL3 147 aa13.16□□□□□ -0.3
SEMA3B-209ENST00000456560 FAM110AQ9BQ89 295 aa13.16□□□□□ -0.3
SEMA3B-209ENST00000456560 C19orf73Q9NVV2 129 aa13.16□□□□□ -0.3
SEMA3B-209ENST00000456560 VSIG2Q96IQ7 327 aa13.16□□□□□ -0.3
SEMA3B-209ENST00000456560 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.15□□□□□ -0.3
SEMA3B-209ENST00000456560 LITAFQ99732 161 aa13.15□□□□□ -0.3
SEMA3B-209ENST00000456560 TRAV4A0A0B4J268 109 aa13.15□□□□□ -0.31
SEMA3B-209ENST00000456560 TRBV10-1A0A0K0K1A3 114 aa13.15□□□□□ -0.31
SEMA3B-209ENST00000456560 M0QXV9 152 aa13.14□□□□□ -0.31
SEMA3B-209ENST00000456560 HILS1P60008 231 aa13.14□□□□□ -0.31
SEMA3B-209ENST00000456560 K7EQD1 137 aa13.13□□□□□ -0.31
SEMA3B-209ENST00000456560 DAZ2Q13117 558 aaKnown RBP13.13□□□□□ -0.31
SEMA3B-209ENST00000456560 IGLV5-45A0A087WSX0 123 aa13.13□□□□□ -0.31
SEMA3B-209ENST00000456560 TIRAPP58753 221 aa13.13□□□□□ -0.31
SEMA3B-209ENST00000456560 ATXN8Q156A1 80 aa13.13□□□□□ -0.31
SEMA3B-209ENST00000456560 WFDC10AQ9H1F0 79 aa13.13□□□□□ -0.31
SEMA3B-209ENST00000456560 PLAC8L1A1L4L8 177 aa13.12□□□□□ -0.31
SEMA3B-209ENST00000456560 NDUFA7O95182 113 aa13.12□□□□□ -0.31
SEMA3B-209ENST00000456560 RPL36AP83881 106 aaKnown RBP13.12□□□□□ -0.31
SEMA3B-209ENST00000456560 RPL36ALQ969Q0 106 aaKnown RBP13.12□□□□□ -0.31
SEMA3B-209ENST00000456560 NOP10Q9NPE3 64 aaKnown RBP13.12□□□□□ -0.31
SEMA3B-209ENST00000456560 NDUFA12Q9UI09 145 aa13.12□□□□□ -0.31
SEMA3B-209ENST00000456560 INAFM1C9JVW0 142 aa13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 ZFAND6Q6FIF0 208 aa13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 F8P00451 2351 aa13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 LINC01620Q4KN68 170 aa13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 DGAT2L7PQ6IED9 249 aa13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 NTM-AS1Q6ZSK4 140 aa13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 DAZ4Q86SG3 579 aaKnown RBP13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 RNF183Q96D59 192 aa13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 DAZ3Q9NR90 486 aaKnown RBP13.11□□□□□ -0.31
SEMA3B-209ENST00000456560 A8MZ25 164 aa13.1□□□□□ -0.31
SEMA3B-209ENST00000456560 LINC00694P0DN24 101 aa13.1□□□□□ -0.31
SEMA3B-209ENST00000456560 CSNK1G2-AS1Q8NCQ2 148 aa13.1□□□□□ -0.31
SEMA3B-209ENST00000456560 NTN5Q8WTR8 489 aaPredicted RBP13.1□□□□□ -0.31
SEMA3B-209ENST00000456560 CDKN2A-AS1Q9UH64 79 aa13.1□□□□□ -0.31
SEMA3B-209ENST00000456560 NSD1Q96L73 2696 aaPredicted RBP13.1□□□□□ -0.31
SEMA3B-209ENST00000456560 RPL35AP18077 110 aaKnown RBP13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 CFAP161Q6P656 301 aa13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 C16orf74Q96GX8 76 aa13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 ANAPC13Q9BS18 74 aa13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 ADAMTSL4-AS1Q5T5F5 129 aa13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 FAM19A3Q7Z5A8 133 aa13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 SPANXDQ9BXN6 97 aa13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 SPANXCQ9NY87 97 aa13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 CSDC2Q9Y534 153 aaKnown RBP13.09□□□□□ -0.31
SEMA3B-209ENST00000456560 FN1P02751 2386 aaKnown RBP13.08□□□□□ -0.32
SEMA3B-209ENST00000456560 PRSS2P07478 247 aa13.08□□□□□ -0.32
SEMA3B-209ENST00000456560 COX6A2Q02221 97 aa13.08□□□□□ -0.32
SEMA3B-209ENST00000456560 CITED1Q99966 193 aa13.08□□□□□ -0.32
SEMA3B-209ENST00000456560 OVOL2Q9BRP0 275 aa13.08□□□□□ -0.32
SEMA3B-209ENST00000456560 TRBV30A0A0K0K1B3 111 aa13.07□□□□□ -0.32
SEMA3B-209ENST00000456560 TRIAP1O43715 76 aa13.07□□□□□ -0.32
SEMA3B-209ENST00000456560 GAGE12JA6NER3 117 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms