RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SPRY4Q9C004 299 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 C19orf71A6NCJ1 209 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 M0R378 163 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 LELP1Q5T871 98 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 C1orf158Q8N1D5 194 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 SERP2Q8N6R1 65 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 ZFHX2Q9C0A1 2572 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-204ENST00000423058 PLAC8L1A1L4L8 177 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 PRAC2D3DTV9 90 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 MPLKIPQ8TAP9 179 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 IGLV9-49A0A0B4J1Y8 123 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 MSRB1Q9NZV6 116 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 DOPEY1Q5JWR5 2465 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 CCKP06307 115 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 LYPD6Q86Y78 171 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 LINC00467Q9BRT7 94 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 MYO18BQ8IUG5 2567 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 FSTL3O95633 263 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 FAM167A-AS1Q96KT0 104 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 A0A0J9YXY3 114 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 A0A1B0GXF2 115 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 Q6ZSR3 168 aa5.16□□□□□ -1.58
SCN1A-204ENST00000423058 A6NED7 52 aa5.15□□□□□ -1.58
SCN1A-204ENST00000423058 HIVEP3Q5T1R4 2406 aa5.15□□□□□ -1.58
SCN1A-204ENST00000423058 CD164L2Q6UWJ8 174 aa5.15□□□□□ -1.58
SCN1A-204ENST00000423058 CUL9Q8IWT3 2517 aa5.15□□□□□ -1.58
SCN1A-204ENST00000423058 BDP1A6H8Y1 2624 aa5.15□□□□□ -1.58
SCN1A-204ENST00000423058 IGLV5-52A0A0A0MRZ9 124 aa5.15□□□□□ -1.59
SCN1A-204ENST00000423058 K7EQG2 157 aa5.15□□□□□ -1.59
SCN1A-204ENST00000423058 CDPF1Q6NVV7 123 aa5.15□□□□□ -1.59
SCN1A-204ENST00000423058 IGKV2-28A0A075B6P5 120 aa5.14□□□□□ -1.59
SCN1A-204ENST00000423058 IGKV2D-28P01615 120 aa5.14□□□□□ -1.59
SCN1A-204ENST00000423058 CFAP126Q5VTH2 177 aa5.14□□□□□ -1.59
SCN1A-204ENST00000423058 CCDC140Q96MF4 163 aa5.14□□□□□ -1.59
SCN1A-204ENST00000423058 A0A0J9YWU9 116 aa5.14□□□□□ -1.59
SCN1A-204ENST00000423058 FXYD2P54710 66 aa5.14□□□□□ -1.59
SCN1A-204ENST00000423058 UQCRQO14949 82 aa5.14□□□□□ -1.59
SCN1A-204ENST00000423058 PATE2Q6UY27 113 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 FAM19A3Q7Z5A8 133 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 NEXN-AS1Q8NBZ9 246 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 C3orf84H3BNL1 204 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 CIRBP-AS1Q8TBR5 109 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 PSMG3-AS1Q96PY0 264 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 LMO4P61968 165 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 ENHOQ6UWT2 76 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 CACNA1AO00555 2505 aa5.13□□□□□ -1.59
SCN1A-204ENST00000423058 MRPS36P82909 103 aaKnown RBP5.12□□□□□ -1.59
SCN1A-204ENST00000423058 WFDC2Q14508 124 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 TP53TG3Q9ULZ0 132 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 SDIM1Q6ZPB5 146 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 PPDPFQ9H3Y8 114 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 XAGE1AQ9HD64 81 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 Q8NA96 180 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 TMEM223A0PJW6 202 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 TIMM17BO60830 172 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 ZFYVE26Q68DK2 2539 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 CEMP1Q6PRD7 247 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-204ENST00000423058 Q6ZSV7 163 aa5.12□□□□□ -1.59
SCN1A-204ENST00000423058 LINC00482Q8N8I6 264 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 PLA2G2AP14555 144 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 TRBV30A0A0K0K1B3 111 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 C20orf197Q8N268 126 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 LINC00337Q8N6G1 96 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 MLST8Q9BVC4 326 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 LINC00308Q8TCZ7 52 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 LIMD2Q9BT23 127 aa5.11□□□□□ -1.59
SCN1A-204ENST00000423058 IGLC6P0CF74 106 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 TRBV6-5A0A0K0K1A5 114 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 F8WDY8 70 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 CLUHP3Q96NS8 147 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 NHLRC4P0CG21 123 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-204ENST00000423058 IGHV4-30-4P0DP06 118 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 REG3GQ6UW15 175 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-204ENST00000423058 BBC3Q96PG8 261 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-204ENST00000423058 DEFB1P60022 68 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 C6orf99Q4VX62 202 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 SCXQ7RTU7 201 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 IGLV4-3A0A075B6K6 122 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 RPL37AP8A6NKH3 93 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 CDKN2A-AS1Q9UH64 79 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 NANOS2P60321 138 aaKnown RBP5.1□□□□□ -1.59
SCN1A-204ENST00000423058 DCANP1Q8TF63 244 aa5.1□□□□□ -1.59
SCN1A-204ENST00000423058 LST1O00453 97 aa5.09□□□□□ -1.59
SCN1A-204ENST00000423058 LINC00574Q9H8X3 128 aa5.09□□□□□ -1.59
SCN1A-204ENST00000423058 PYGO1Q9Y3Y4 419 aa5.09□□□□□ -1.59
SCN1A-204ENST00000423058 X6R8D5 127 aa5.09□□□□□ -1.59
SCN1A-204ENST00000423058 M0QXV9 152 aa5.09□□□□□ -1.59
SCN1A-204ENST00000423058 NDUFV3P56181 108 aaKnown RBP5.09□□□□□ -1.59
SCN1A-204ENST00000423058 ESRGQ1W209 222 aa5.09□□□□□ -1.59
SCN1A-204ENST00000423058 NOTCH2Q04721 2471 aa5.09□□□□□ -1.59
SCN1A-204ENST00000423058 E7EUB6 86 aa5.09□□□□□ -1.6
SCN1A-204ENST00000423058 LINC00173Q6ZV60 143 aa5.09□□□□□ -1.6
SCN1A-204ENST00000423058 ZNF524Q96C55 264 aa5.09□□□□□ -1.6
SCN1A-204ENST00000423058 M0QY20 66 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 NDUFA7O95182 113 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 P0C879 139 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 RBX1P62877 108 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 WFDC13Q8IUB5 93 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 U3KQK5 164 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms