RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TRAV12-1A0A0B4J245 112 aa11.81□□□□□ -0.52
CCDC28B-202ENST00000421922 CCL18P55774 89 aa11.81□□□□□ -0.52
CCDC28B-202ENST00000421922 MRPS36P82909 103 aaKnown RBP11.81□□□□□ -0.52
CCDC28B-202ENST00000421922 LGALS9CQ6DKI2 356 aa11.81□□□□□ -0.52
CCDC28B-202ENST00000421922 Q6ZUT4 128 aa11.81□□□□□ -0.52
CCDC28B-202ENST00000421922 OPRPNQ99935 248 aaPredicted RBP11.81□□□□□ -0.52
CCDC28B-202ENST00000421922 CSDC2Q9Y534 153 aaKnown RBP11.81□□□□□ -0.52
CCDC28B-202ENST00000421922 PYY3Q5JQD4 70 aa11.8□□□□□ -0.52
CCDC28B-202ENST00000421922 CHTOPQ9Y3Y2 248 aaKnown RBP11.8□□□□□ -0.52
CCDC28B-202ENST00000421922 ESRGQ1W209 222 aa11.79□□□□□ -0.52
CCDC28B-202ENST00000421922 RNASE13Q5GAN3 156 aaKnown RBP11.79□□□□□ -0.52
CCDC28B-202ENST00000421922 LINC01545Q5VT33 79 aa11.79□□□□□ -0.52
CCDC28B-202ENST00000421922 PRSS29PA6NIE9 313 aa11.78□□□□□ -0.52
CCDC28B-202ENST00000421922 ZNF664Q8N3J9 261 aa11.78□□□□□ -0.52
CCDC28B-202ENST00000421922 PMCHL2Q9BQD1 86 aa11.78□□□□□ -0.52
CCDC28B-202ENST00000421922 CST9LQ9H4G1 147 aa11.78□□□□□ -0.52
CCDC28B-202ENST00000421922 RBX1P62877 108 aa11.77□□□□□ -0.52
CCDC28B-202ENST00000421922 ODF1Q14990 250 aa11.77□□□□□ -0.52
CCDC28B-202ENST00000421922 MPV17L2Q567V2 206 aa11.77□□□□□ -0.52
CCDC28B-202ENST00000421922 A0A1B0GUV1 79 aa11.77□□□□□ -0.53
CCDC28B-202ENST00000421922 F8VRH5 84 aa11.77□□□□□ -0.53
CCDC28B-202ENST00000421922 DPM2O94777 84 aa11.77□□□□□ -0.53
CCDC28B-202ENST00000421922 PLNP26678 52 aa11.77□□□□□ -0.53
CCDC28B-202ENST00000421922 ZC2HC1BQ5TFG8 222 aa11.77□□□□□ -0.53
CCDC28B-202ENST00000421922 Q8N976 141 aa11.77□□□□□ -0.53
CCDC28B-202ENST00000421922 CDC42SE2Q9NRR3 84 aa11.77□□□□□ -0.53
CCDC28B-202ENST00000421922 TCTAP57738 103 aa11.76□□□□□ -0.53
CCDC28B-202ENST00000421922 S100A12P80511 92 aa11.76□□□□□ -0.53
CCDC28B-202ENST00000421922 UBE2DNLQ8IWF7 75 aa11.76□□□□□ -0.53
CCDC28B-202ENST00000421922 AMELXQ99217 191 aa11.76□□□□□ -0.53
CCDC28B-202ENST00000421922 MRPL35Q9NZE8 188 aaKnown RBP11.76□□□□□ -0.53
CCDC28B-202ENST00000421922 IGLV4-60A0A075B6I1 120 aa11.75□□□□□ -0.53
CCDC28B-202ENST00000421922 HSBP1L1C9JCN9 74 aa11.75□□□□□ -0.53
CCDC28B-202ENST00000421922 IGKCP01834 107 aa11.75□□□□□ -0.53
CCDC28B-202ENST00000421922 ANGP03950 147 aaKnown RBP11.75□□□□□ -0.53
CCDC28B-202ENST00000421922 ATOH7Q8N100 152 aa11.75□□□□□ -0.53
CCDC28B-202ENST00000421922 MRPS16Q9Y3D3 137 aaKnown RBP11.75□□□□□ -0.53
CCDC28B-202ENST00000421922 IGKV3OR2-268A0A0C4DH90 116 aa11.74□□□□□ -0.53
CCDC28B-202ENST00000421922 ZFAND6Q6FIF0 208 aa11.74□□□□□ -0.53
CCDC28B-202ENST00000421922 WFDC10BQ8IUB3 73 aa11.74□□□□□ -0.53
CCDC28B-202ENST00000421922 C12orf57Q99622 126 aa11.74□□□□□ -0.53
CCDC28B-202ENST00000421922 IGHV3-30P01768 117 aa11.73□□□□□ -0.53
CCDC28B-202ENST00000421922 IGHV3-33P01772 117 aa11.73□□□□□ -0.53
CCDC28B-202ENST00000421922 IGHV3-30-3P0DP02 117 aa11.73□□□□□ -0.53
CCDC28B-202ENST00000421922 IGHV3-30-5P0DP03 117 aa11.73□□□□□ -0.53
CCDC28B-202ENST00000421922 MUC7Q8TAX7 377 aa11.73□□□□□ -0.53
CCDC28B-202ENST00000421922 WWC2-AS2Q96NR7 200 aa11.73□□□□□ -0.53
CCDC28B-202ENST00000421922 APLNQ9ULZ1 77 aa11.73□□□□□ -0.53
CCDC28B-202ENST00000421922 TRAV13-1A0A0B4J241 112 aa11.72□□□□□ -0.53
CCDC28B-202ENST00000421922 CHAC1Q9BUX1 264 aa11.72□□□□□ -0.53
CCDC28B-202ENST00000421922 VAMP8Q9BV40 100 aa11.72□□□□□ -0.53
CCDC28B-202ENST00000421922 GEMIN7Q9H840 131 aaKnown RBP11.72□□□□□ -0.53
CCDC28B-202ENST00000421922 LINC00588Q9Y4M8 146 aa11.72□□□□□ -0.53
CCDC28B-202ENST00000421922 CRPP02741 224 aa11.71□□□□□ -0.53
CCDC28B-202ENST00000421922 SEC11AP67812 179 aa11.71□□□□□ -0.53
CCDC28B-202ENST00000421922 FAM104AQ969W3 186 aa11.71□□□□□ -0.53
CCDC28B-202ENST00000421922 UBE2D1P51668 147 aa11.7□□□□□ -0.54
CCDC28B-202ENST00000421922 CLPSL2Q6UWE3 100 aa11.7□□□□□ -0.54
CCDC28B-202ENST00000421922 A0A0J9YXV3 536 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 SIVA1O15304 175 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 IGLC3P0DOY3 106 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 SS18Q15532 418 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 LINC00518Q8N0U6 118 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 IGLV4-69A0A075B6H9 119 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 TRAV9-2A0A087WT02 112 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 TINCRA0A1B0GVN0 87 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 LINC01556Q5JQF7 62 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 TMEM170BQ5T4T1 132 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 CDPF1Q6NVV7 123 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 LINC00269Q8N2A0 174 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 Q8N3U1 123 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 KLK12Q9UKR0 248 aa11.69□□□□□ -0.54
CCDC28B-202ENST00000421922 C11orf86A6NJI1 115 aa11.68□□□□□ -0.54
CCDC28B-202ENST00000421922 HERVK_113P61574 105 aa11.68□□□□□ -0.54
CCDC28B-202ENST00000421922 HERVK_113P63121 156 aa11.68□□□□□ -0.54
CCDC28B-202ENST00000421922 REG3AQ06141 175 aa11.68□□□□□ -0.54
CCDC28B-202ENST00000421922 NFE4Q86UQ8 179 aa11.68□□□□□ -0.54
CCDC28B-202ENST00000421922 UPK3BQ9BT76 320 aa11.68□□□□□ -0.54
CCDC28B-202ENST00000421922 PAM16Q9Y3D7 125 aa11.68□□□□□ -0.54
CCDC28B-202ENST00000421922 LINC00469Q8N7U9 141 aa11.67□□□□□ -0.54
CCDC28B-202ENST00000421922 LINC00959A0A1B0GUT2 108 aa11.66□□□□□ -0.54
CCDC28B-202ENST00000421922 hDV102S1A0JD36 115 aa11.66□□□□□ -0.54
CCDC28B-202ENST00000421922 CCL25O15444 150 aa11.66□□□□□ -0.54
CCDC28B-202ENST00000421922 DNAH10OSP0CZ25 163 aa11.66□□□□□ -0.54
CCDC28B-202ENST00000421922 SPATA45Q537H7 98 aa11.66□□□□□ -0.54
CCDC28B-202ENST00000421922 H3BRM9 83 aa11.65□□□□□ -0.54
CCDC28B-202ENST00000421922 UBE2WQ96B02 151 aa11.65□□□□□ -0.54
CCDC28B-202ENST00000421922 LINC00242Q5T6M2 205 aa11.64□□□□□ -0.55
CCDC28B-202ENST00000421922 C10orf126Q8N4M7 172 aa11.64□□□□□ -0.55
CCDC28B-202ENST00000421922 ZNF22P17026 224 aaPredicted RBP11.63□□□□□ -0.55
CCDC28B-202ENST00000421922 MAJINQ3KP22 176 aa11.63□□□□□ -0.55
CCDC28B-202ENST00000421922 FAM19A3Q7Z5A8 133 aa11.63□□□□□ -0.55
CCDC28B-202ENST00000421922 Q9H8V8 135 aa11.63□□□□□ -0.55
CCDC28B-202ENST00000421922 STPG4Q8N801 248 aa11.62□□□□□ -0.55
CCDC28B-202ENST00000421922 XCL1P47992 114 aa11.61□□□□□ -0.55
CCDC28B-202ENST00000421922 MIAQ16674 131 aa11.61□□□□□ -0.55
CCDC28B-202ENST00000421922 IGLV10-54A0A075B6I4 117 aa11.6□□□□□ -0.55
CCDC28B-202ENST00000421922 TRAV8-4A0A0B4J246 113 aa11.6□□□□□ -0.55
CCDC28B-202ENST00000421922 CHCHD10Q8WYQ3 142 aaPredicted RBP11.6□□□□□ -0.55
CCDC28B-202ENST00000421922 PRR34Q9NV39 138 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms