RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 C5orf56Q8N8D9 126 aa1.93□□□□□ -2.1
BRCA1-204ENST00000412061 ZC3H13Q5T200 1668 aaKnown RBP1.93□□□□□ -2.1
BRCA1-204ENST00000412061 MAP3K4Q9Y6R4 1608 aa1.93□□□□□ -2.1
BRCA1-204ENST00000412061 CEP170BQ9Y4F5 1589 aaPredicted RBP1.93□□□□□ -2.1
BRCA1-204ENST00000412061 HMCN1Q96RW7 5635 aa1.93□□□□□ -2.1
BRCA1-204ENST00000412061 COL4A1P02462 1669 aa1.93□□□□□ -2.1
BRCA1-204ENST00000412061 PREX1Q8TCU6 1659 aa1.93□□□□□ -2.1
BRCA1-204ENST00000412061 RAPGEF6Q8TEU7 1601 aa1.93□□□□□ -2.1
BRCA1-204ENST00000412061 IGKV2-40A0A087WW87 121 aaPredicted RBP1.92□□□□□ -2.1
BRCA1-204ENST00000412061 CLPSL1A2RUU4 121 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 FXYD1O00168 92 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 IGKV2D-40P01614 121 aaPredicted RBP1.92□□□□□ -2.1
BRCA1-204ENST00000412061 KRTDAPP60985 99 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 Q0VG73 95 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 S100ZQ8WXG8 99 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 LINC00208Q96KT6 92 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 ERCC6L2Q5T890 1561 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 NEXMIFQ5QGS0 1516 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 HIVEP2P31629 2446 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 MED13Q9UHV7 2174 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 UGGT1Q9NYU2 1555 aa1.92□□□□□ -2.1
BRCA1-204ENST00000412061 CRYM-AS1A6NIL9 109 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 KRTAP6-3Q3LI67 103 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 COX7B2Q8TF08 81 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 DEPDC5O75140 1603 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 PREX2Q70Z35 1606 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 ABCC1P33527 1531 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 PEAK1Q9H792 1746 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 TRBV7-3A0A075B6L6 115 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 IGLC1P0CG04 106 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 TRAPPC2P0DI81 140 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 TRAPPC2BP0DI82 140 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 SEC11AP67812 179 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 ZNF56Q15929 161 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 FAM74A4Q5TZK3 123 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 Q6ZQY7 126 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 Q86TA4 180 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 PPP1R1CQ8WVI7 109 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 PRO1933Q9H354 126 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 BET1LQ9NYM9 111 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 SCP2D1Q9UJQ7 156 aa1.91□□□□□ -2.1
BRCA1-204ENST00000412061 MRC1P22897 1456 aa1.9□□□□□ -2.1
BRCA1-204ENST00000412061 EDC4Q6P2E9 1401 aaKnown RBP1.9□□□□□ -2.1
BRCA1-204ENST00000412061 TMEM131LA2VDJ0 1609 aa1.9□□□□□ -2.1
BRCA1-204ENST00000412061 KIAA0556O60303 1618 aa1.9□□□□□ -2.1
BRCA1-204ENST00000412061 MROH1Q8NDA8 1641 aa1.9□□□□□ -2.1
BRCA1-204ENST00000412061 DIP2AQ14689 1571 aa1.9□□□□□ -2.11
BRCA1-204ENST00000412061 TULP4Q9NRJ4 1543 aa1.9□□□□□ -2.11
BRCA1-204ENST00000412061 A0A0G2JND7 137 aa1.9□□□□□ -2.11
BRCA1-204ENST00000412061 MANBALQ9NQG1 85 aa1.9□□□□□ -2.11
BRCA1-204ENST00000412061 LRRC37A3O60309 1634 aa1.9□□□□□ -2.11
BRCA1-204ENST00000412061 LOC285556D6RIA3 1793 aa1.89□□□□□ -2.11
BRCA1-204ENST00000412061 ABCA8O94911 1581 aa1.89□□□□□ -2.11
BRCA1-204ENST00000412061 XRN1Q8IZH2 1706 aaKnown RBP1.89□□□□□ -2.11
BRCA1-204ENST00000412061 IFT172Q9UG01 1749 aa1.89□□□□□ -2.11
BRCA1-204ENST00000412061 WNK3Q9BYP7 1800 aa1.89□□□□□ -2.11
BRCA1-204ENST00000412061 EDDM3BP56851 147 aa1.89□□□□□ -2.11
BRCA1-204ENST00000412061 C6orf52Q5T4I8 152 aa1.89□□□□□ -2.11
BRCA1-204ENST00000412061 CCL19Q99731 98 aa1.89□□□□□ -2.11
BRCA1-204ENST00000412061 ITSN1Q15811 1721 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 CLTCQ00610 1675 aaKnown RBP1.88□□□□□ -2.11
BRCA1-204ENST00000412061 PI4KAP42356 2102 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 DOCK11Q5JSL3 2073 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 MARF1Q9Y4F3 1742 aaKnown RBP1.88□□□□□ -2.11
BRCA1-204ENST00000412061 A0A1W2PPM0 123 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 ATOX1O00244 68 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 CAV3P56539 151 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 ELOF1P60002 83 aaKnown RBP1.88□□□□□ -2.11
BRCA1-204ENST00000412061 DEFB107AQ8IZN7 70 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 MGST2Q99735 147 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 NPVFQ9HCQ7 196 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 SBF2Q86WG5 1849 aa1.88□□□□□ -2.11
BRCA1-204ENST00000412061 PXDNQ92626 1479 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.87□□□□□ -2.11
BRCA1-204ENST00000412061 PPP1R17O96001 155 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 KLKP1Q107X0 134 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 Q5BKY6 102 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 PYY3Q5JQD4 70 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 KRTAP13-1Q8IUC0 172 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 LENEPQ9Y5L5 61 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 V9GYV3 84 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 CPS1P31327 1500 aa1.87□□□□□ -2.11
BRCA1-204ENST00000412061 PIK3C2BO00750 1634 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 MON2Q7Z3U7 1717 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 MROH2AA6NES4 1674 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 SLIT1O75093 1534 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 CACNA1BQ00975 2339 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 LRP6O75581 1613 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 A0A087WTM6 91 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 CHKB-CPT1BH3BT56 60 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 NCR3O14931 201 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 SFT2D2O95562 160 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 FAUP35544 74 aaKnown RBP1.86□□□□□ -2.11
BRCA1-204ENST00000412061 ASIPP42127 132 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 FAM167A-AS1Q96KT0 104 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 DYNLRB1Q9NP97 96 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 NDUFA4L2Q9NRX3 87 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 UQCR10Q9UDW1 63 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 C4AP0C0L4 1744 aa1.86□□□□□ -2.11
BRCA1-204ENST00000412061 C4BP0C0L5 1744 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms