RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 Q6AWC8 147 aa4.35□□□□□ -1.71
USP40-202ENST00000409945 TMEM136Q6ZRR5 245 aa4.35□□□□□ -1.71
USP40-202ENST00000409945 ZFAND2AQ8N6M9 145 aa4.35□□□□□ -1.71
USP40-202ENST00000409945 RYR2Q92736 4967 aa4.35□□□□□ -1.71
USP40-202ENST00000409945 C19orf71A6NCJ1 209 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 HIGD1CA8MV81 97 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 PRM2P04554 102 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 TAL2Q16559 108 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 MRPL54Q6P161 138 aaKnown RBP4.34□□□□□ -1.71
USP40-202ENST00000409945 NUP35Q8NFH5 326 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 PLAC8L1A1L4L8 177 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 H3BNG1 76 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 OXTP01178 125 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 APCSP02743 223 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 PPBPP02775 128 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 IQCJQ1A5X6 159 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 PRNTQ86SH4 94 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 BAGE3Q86Y29 109 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 C18orf15Q96N68 181 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 PSG8Q9UQ74 426 aa4.34□□□□□ -1.71
USP40-202ENST00000409945 DNAH1Q9P2D7 4330 aa4.34□□□□□ -1.72
USP40-202ENST00000409945 TRGV4A0A0C4DH28 118 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 GRIFINA4D1Z8 144 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 TSTD3H0UI37 97 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 SPINK4O60575 86 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 GZMBP10144 247 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 S100A4P26447 101 aaKnown RBP4.33□□□□□ -1.72
USP40-202ENST00000409945 PKIAP61925 76 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 HBBP68871 147 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 CXCL6P80162 114 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 TDRG1Q3Y452 100 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 FAM162BQ5T6X4 162 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 Q6ZTI0 123 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 TRAV8-1A0A0A6YYK1 113 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 A0A1B0GXF2 115 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 FABP5P3A8MUU1 101 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 SERF1AO75920 110 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 SRIP30626 198 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 FOXA3P55318 350 aaPredicted RBP4.33□□□□□ -1.72
USP40-202ENST00000409945 LINC00612Q8N6U2 182 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 SAMD10Q9BYL1 202 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 PRO0255Q9UI72 69 aa4.33□□□□□ -1.72
USP40-202ENST00000409945 A0A0J9YY99 117 aa4.32□□□□□ -1.72
USP40-202ENST00000409945 M0R2P5 195 aa4.32□□□□□ -1.72
USP40-202ENST00000409945 TTC32Q5I0X7 151 aa4.32□□□□□ -1.72
USP40-202ENST00000409945 PRR9Q5T870 116 aa4.32□□□□□ -1.72
USP40-202ENST00000409945 C11orf72Q8NBR9 251 aa4.32□□□□□ -1.72
USP40-202ENST00000409945 MRPL16Q9NX20 251 aaKnown RBP4.32□□□□□ -1.72
USP40-202ENST00000409945 TP53TG3Q9ULZ0 132 aa4.32□□□□□ -1.72
USP40-202ENST00000409945 ICOSQ9Y6W8 199 aa4.32□□□□□ -1.72
USP40-202ENST00000409945 A0A1B0GUT8 65 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 UFSP1Q6NVU6 142 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 SH2D6Q7Z4S9 175 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 BORCS7Q96B45 105 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 ZC2HC1AQ96GY0 325 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 C9orf85Q96MD7 179 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 HHLA3Q9XRX5 114 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 TRAV4A0A0B4J268 109 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 NUPR1O60356 82 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 IGHV3-53P01767 116 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 ASIPP42127 132 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 RPL32P62910 135 aaKnown RBP4.31□□□□□ -1.72
USP40-202ENST00000409945 C18orf32Q8TCD1 76 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 PGLYRP4Q96LB8 373 aa4.31□□□□□ -1.72
USP40-202ENST00000409945 IGLV2-18A0A075B6J9 118 aa4.3□□□□□ -1.72
USP40-202ENST00000409945 TINCRA0A1B0GVN0 87 aa4.3□□□□□ -1.72
USP40-202ENST00000409945 M0R2N4 97 aa4.3□□□□□ -1.72
USP40-202ENST00000409945 RPS20P60866 119 aaKnown RBP4.3□□□□□ -1.72
USP40-202ENST00000409945 VSIG2Q96IQ7 327 aa4.3□□□□□ -1.72
USP40-202ENST00000409945 PRADC1Q9BSG0 188 aa4.3□□□□□ -1.72
USP40-202ENST00000409945 Q9UF83 564 aa4.3□□□□□ -1.72
USP40-202ENST00000409945 GNRH2O43555 120 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 DDTP30046 118 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 KRTAP10-6P60371 365 aaPredicted RBP4.29□□□□□ -1.72
USP40-202ENST00000409945 KRTAP10-12P60413 245 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 C1orf134Q5TEV5 83 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 NEGR1Q7Z3B1 354 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 GATD1Q8NB37 220 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 C2orf88Q9BSF0 95 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 A8MWV9 139 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 F2Z2F3 143 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 SH2D1AO60880 128 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 SCGB1A1P11684 91 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 CRIP1P50238 77 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 FAM19A1Q7Z5A9 133 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 ZNF664Q8N3J9 261 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 CHCHD1Q96BP2 118 aaKnown RBP4.29□□□□□ -1.72
USP40-202ENST00000409945 PHLDA3Q9Y5J5 127 aa4.29□□□□□ -1.72
USP40-202ENST00000409945 HYDINQ4G0P3 5121 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 NBDYA0A0U1RRE5 68 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 RHOHQ15669 191 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 TEX43Q6ZNM6 134 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 Q6ZQT7 251 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 MTURNQ8N3F0 131 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 UPK3BQ9BT76 320 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 MRPS16Q9Y3D3 137 aaKnown RBP4.28□□□□□ -1.72
USP40-202ENST00000409945 LINC00588Q9Y4M8 146 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 VPS13DQ5THJ4 4388 aa4.28□□□□□ -1.72
USP40-202ENST00000409945 MUC4Q99102 2169 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms