RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 IGHV3-30-5P0DP03 117 aa13.61□□□□□ -0.23
USP48-204ENST00000400301 ANGP03950 147 aaKnown RBP13.61□□□□□ -0.23
USP48-204ENST00000400301 MIAQ16674 131 aa13.61□□□□□ -0.23
USP48-204ENST00000400301 CRYBA4P53673 196 aa13.61□□□□□ -0.23
USP48-204ENST00000400301 A0A0B4J2C4 111 aa13.6□□□□□ -0.23
USP48-204ENST00000400301 A8MZ25 164 aa13.6□□□□□ -0.23
USP48-204ENST00000400301 ATP6V0E2Q8NHE4 81 aa13.6□□□□□ -0.23
USP48-204ENST00000400301 CLEC2BQ92478 149 aa13.6□□□□□ -0.23
USP48-204ENST00000400301 CENPEQ02224 2701 aa13.6□□□□□ -0.23
USP48-204ENST00000400301 IGLV4-69A0A075B6H9 119 aa13.6□□□□□ -0.23
USP48-204ENST00000400301 ZNF580Q9UK33 172 aa13.59□□□□□ -0.23
USP48-204ENST00000400301 APOC4P55056 127 aa13.58□□□□□ -0.23
USP48-204ENST00000400301 LINC01546A6NGU7 62 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 IGHV3-33P01772 117 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 INAFM2P0DMQ5 153 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 C15orf53Q8NAA6 179 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 COX7B2Q8TF08 81 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 KIF25-AS1Q9Y6Z4 181 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 RS1O15537 224 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 SND1-IT1Q9HBX3 110 aa13.58□□□□□ -0.24
USP48-204ENST00000400301 CRLF1O75462 422 aa13.57□□□□□ -0.24
USP48-204ENST00000400301 FREM2Q5SZK8 3169 aa13.57□□□□□ -0.24
USP48-204ENST00000400301 ESM1Q9NQ30 184 aa13.57□□□□□ -0.24
USP48-204ENST00000400301 TRBV10-2A0A0K0K1G8 114 aa13.57□□□□□ -0.24
USP48-204ENST00000400301 BOD1L1Q8NFC6 3051 aa13.56□□□□□ -0.24
USP48-204ENST00000400301 BAALC-AS2P0C853 105 aa13.55□□□□□ -0.24
USP48-204ENST00000400301 TSPEAR-AS2P59090 65 aa13.55□□□□□ -0.24
USP48-204ENST00000400301 KLK9Q2XQG4 91 aa13.54□□□□□ -0.24
USP48-204ENST00000400301 UBE2D4Q9Y2X8 147 aa13.54□□□□□ -0.24
USP48-204ENST00000400301 IGLV10-54A0A075B6I4 117 aa13.53□□□□□ -0.24
USP48-204ENST00000400301 MIR7-3HGQ8N6C7 128 aa13.53□□□□□ -0.24
USP48-204ENST00000400301 WFDC10AQ9H1F0 79 aa13.53□□□□□ -0.24
USP48-204ENST00000400301 ODF3L2Q3SX64 289 aa13.53□□□□□ -0.24
USP48-204ENST00000400301 DEFB4AO15263 64 aa13.53□□□□□ -0.24
USP48-204ENST00000400301 LINC00315P59091 139 aa13.53□□□□□ -0.24
USP48-204ENST00000400301 FAM19A4Q96LR4 140 aa13.53□□□□□ -0.24
USP48-204ENST00000400301 UBE2D1P51668 147 aa13.52□□□□□ -0.25
USP48-204ENST00000400301 LINC01006Q8NI28 216 aa13.52□□□□□ -0.25
USP48-204ENST00000400301 TIRAPP58753 221 aa13.51□□□□□ -0.25
USP48-204ENST00000400301 LAMTOR3Q9UHA4 124 aa13.51□□□□□ -0.25
USP48-204ENST00000400301 H3BT86 120 aa13.51□□□□□ -0.25
USP48-204ENST00000400301 TRIAP1O43715 76 aa13.51□□□□□ -0.25
USP48-204ENST00000400301 INSL3P51460 131 aa13.51□□□□□ -0.25
USP48-204ENST00000400301 MRPS36P82909 103 aaKnown RBP13.51□□□□□ -0.25
USP48-204ENST00000400301 C9orf66Q5T8R8 295 aa13.51□□□□□ -0.25
USP48-204ENST00000400301 DEFB135Q30KP9 77 aa13.5□□□□□ -0.25
USP48-204ENST00000400301 PIK3CD-AS1Q5SR53 167 aa13.49□□□□□ -0.25
USP48-204ENST00000400301 FASNP49327 2511 aaKnown RBP13.49□□□□□ -0.25
USP48-204ENST00000400301 MAP1AP78559 2803 aaPredicted RBP13.48□□□□□ -0.25
USP48-204ENST00000400301 NDUFA1O15239 70 aa13.48□□□□□ -0.25
USP48-204ENST00000400301 LINC00308Q8TCZ7 52 aa13.48□□□□□ -0.25
USP48-204ENST00000400301 HIST1H4AP62805 103 aaKnown RBP13.47□□□□□ -0.25
USP48-204ENST00000400301 PRO0255Q9UI72 69 aa13.47□□□□□ -0.25
USP48-204ENST00000400301 GHRHP01286 108 aa13.46□□□□□ -0.25
USP48-204ENST00000400301 TEX49A0A1B0GTD5 131 aa13.46□□□□□ -0.25
USP48-204ENST00000400301 ATP5G1P05496 136 aa13.46□□□□□ -0.26
USP48-204ENST00000400301 TRBV30A0A0K0K1B3 111 aa13.45□□□□□ -0.26
USP48-204ENST00000400301 ZNF561-AS1K7EIQ3 104 aa13.45□□□□□ -0.26
USP48-204ENST00000400301 MT-ATP8P03928 68 aa13.45□□□□□ -0.26
USP48-204ENST00000400301 Q6ZSN1 163 aa13.45□□□□□ -0.26
USP48-204ENST00000400301 COX7A2LO14548 114 aa13.45□□□□□ -0.26
USP48-204ENST00000400301 LOC100131303A0A0U1RQF7 123 aa13.44□□□□□ -0.26
USP48-204ENST00000400301 TRBV6-4A0A1B0GX49 114 aa13.44□□□□□ -0.26
USP48-204ENST00000400301 BBC3Q96PG8 261 aaPredicted RBP13.44□□□□□ -0.26
USP48-204ENST00000400301 CHCHD7Q9BUK0 85 aa13.44□□□□□ -0.26
USP48-204ENST00000400301 RBMY1FQ15415 496 aaKnown RBP13.43□□□□□ -0.26
USP48-204ENST00000400301 POM121L12Q8N7R1 296 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 TNRC18O15417 2968 aaPredicted RBP13.43□□□□□ -0.26
USP48-204ENST00000400301 C3orf56Q8N813 242 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 USP34Q70CQ2 3546 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 H0YGX0 51 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 SPART-AS1P0CW21 52 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 MRPL23Q16540 153 aaKnown RBP13.43□□□□□ -0.26
USP48-204ENST00000400301 C1orf158Q8N1D5 194 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 SPANXDQ9BXN6 97 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 SPANXCQ9NY87 97 aa13.43□□□□□ -0.26
USP48-204ENST00000400301 NDUFA7O95182 113 aa13.42□□□□□ -0.26
USP48-204ENST00000400301 AMELXQ99217 191 aa13.42□□□□□ -0.26
USP48-204ENST00000400301 ADGRG4Q8IZF6 3080 aa13.42□□□□□ -0.26
USP48-204ENST00000400301 TRBV6-8A0A0A6YYG3 113 aa13.42□□□□□ -0.26
USP48-204ENST00000400301 FAM222AQ5U5X8 452 aa13.4□□□□□ -0.26
USP48-204ENST00000400301 TIMM17BO60830 172 aa13.4□□□□□ -0.26
USP48-204ENST00000400301 LINC00242Q5T6M2 205 aa13.4□□□□□ -0.26
USP48-204ENST00000400301 Q9HAA7 133 aa13.4□□□□□ -0.26
USP48-204ENST00000400301 UBE2D3P61077 147 aa13.4□□□□□ -0.27
USP48-204ENST00000400301 UBE2D2P62837 147 aa13.4□□□□□ -0.27
USP48-204ENST00000400301 LECT2O14960 151 aa13.39□□□□□ -0.27
USP48-204ENST00000400301 ACYP1P07311 99 aa13.39□□□□□ -0.27
USP48-204ENST00000400301 LINC00482Q8N8I6 264 aa13.38□□□□□ -0.27
USP48-204ENST00000400301 ORMDL1Q9P0S3 153 aa13.38□□□□□ -0.27
USP48-204ENST00000400301 H7C423 109 aa13.37□□□□□ -0.27
USP48-204ENST00000400301 LINC00694P0DN24 101 aa13.37□□□□□ -0.27
USP48-204ENST00000400301 CDC42SE2Q9NRR3 84 aa13.37□□□□□ -0.27
USP48-204ENST00000400301 BEAN1Q3B7T3 259 aa13.37□□□□□ -0.27
USP48-204ENST00000400301 EDA2RQ9HAV5 297 aa13.37□□□□□ -0.27
USP48-204ENST00000400301 ADAMTSL4-AS1Q5T5F5 129 aa13.36□□□□□ -0.27
USP48-204ENST00000400301 SPATA25Q9BR10 227 aa13.36□□□□□ -0.27
USP48-204ENST00000400301 LINC00269Q8N2A0 174 aa13.35□□□□□ -0.27
USP48-204ENST00000400301 B5MCH6 92 aa13.35□□□□□ -0.27
USP48-204ENST00000400301 DEFB121Q5J5C9 76 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms