RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ABCA12Q86UK0 2595 aa9.16□□□□□ -0.94
SHMT1-205ENST00000395684 TEX29Q8N6K0 151 aa9.16□□□□□ -0.94
SHMT1-205ENST00000395684 DNAJC30Q96LL9 226 aa9.16□□□□□ -0.94
SHMT1-205ENST00000395684 UBR5O95071 2799 aaPredicted RBP9.16□□□□□ -0.94
SHMT1-205ENST00000395684 C2orf82Q6UX34 121 aa9.16□□□□□ -0.94
SHMT1-205ENST00000395684 IGLV5-45A0A087WSX0 123 aa9.15□□□□□ -0.94
SHMT1-205ENST00000395684 TRAV4A0A0B4J268 109 aa9.15□□□□□ -0.94
SHMT1-205ENST00000395684 RS1O15537 224 aa9.15□□□□□ -0.94
SHMT1-205ENST00000395684 IGHV3OR16-12A0A075B7B8 117 aa9.15□□□□□ -0.95
SHMT1-205ENST00000395684 NBPF19A0A087WUL8 3843 aa9.15□□□□□ -0.95
SHMT1-205ENST00000395684 TIMM17BO60830 172 aa9.15□□□□□ -0.95
SHMT1-205ENST00000395684 COX6CP09669 75 aa9.15□□□□□ -0.95
SHMT1-205ENST00000395684 TIRAPP58753 221 aa9.15□□□□□ -0.95
SHMT1-205ENST00000395684 UBE2WQ96B02 151 aa9.15□□□□□ -0.95
SHMT1-205ENST00000395684 MYO9AB2RTY4 2548 aa9.15□□□□□ -0.95
SHMT1-205ENST00000395684 YAE1D1Q9NRH1 226 aa9.14□□□□□ -0.95
SHMT1-205ENST00000395684 PEMTQ9UBM1 199 aa9.14□□□□□ -0.95
SHMT1-205ENST00000395684 NDUFA1O15239 70 aa9.14□□□□□ -0.95
SHMT1-205ENST00000395684 DEFB114Q30KQ6 69 aa9.14□□□□□ -0.95
SHMT1-205ENST00000395684 ANAPC13Q9BS18 74 aa9.14□□□□□ -0.95
SHMT1-205ENST00000395684 TRAV8-4A0A0B4J246 113 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 LST1O00453 97 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 NDUFA7O95182 113 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 INSP01308 110 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 IGHV4-31P0DP07 118 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 IFITM1P13164 125 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 DGAT2L7PQ6IED9 249 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 CITED2Q99967 270 aaPredicted RBP9.13□□□□□ -0.95
SHMT1-205ENST00000395684 XCL2Q9UBD3 114 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 TEX15Q9BXT5 2789 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 SNCGO76070 127 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 LINC00694P0DN24 101 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 KHDC1LQ5JSQ8 128 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 LINC00242Q5T6M2 205 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 DYNLRB2Q8TF09 96 aa9.13□□□□□ -0.95
SHMT1-205ENST00000395684 NHLRC4P0CG21 123 aaPredicted RBP9.12□□□□□ -0.95
SHMT1-205ENST00000395684 ZNF625Q96I27 306 aaPredicted RBP9.12□□□□□ -0.95
SHMT1-205ENST00000395684 H3BT86 120 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 GAGE2BQ13066 116 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 GAGE2EQ4V326 116 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 Q8N2B8 174 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 C4orf3Q8WVX3 66 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 Q9H8V8 135 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 GAGE2DQ9UEU5 116 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 AKAP9Q99996 3911 aa9.12□□□□□ -0.95
SHMT1-205ENST00000395684 IGLV5-39A0A0G2JS06 123 aa9.11□□□□□ -0.95
SHMT1-205ENST00000395684 A0A0U1RRA0 63 aa9.11□□□□□ -0.95
SHMT1-205ENST00000395684 LINC00308Q8TCZ7 52 aa9.11□□□□□ -0.95
SHMT1-205ENST00000395684 HECTD1Q9ULT8 2610 aa9.11□□□□□ -0.95
SHMT1-205ENST00000395684 CFAP161Q6P656 301 aa9.1□□□□□ -0.95
SHMT1-205ENST00000395684 PTPN13Q12923 2485 aa9.1□□□□□ -0.95
SHMT1-205ENST00000395684 CIRBPQ14011 172 aaKnown RBP9.1□□□□□ -0.95
SHMT1-205ENST00000395684 ODF3L2Q3SX64 289 aa9.1□□□□□ -0.95
SHMT1-205ENST00000395684 C1orf158Q8N1D5 194 aa9.1□□□□□ -0.95
SHMT1-205ENST00000395684 C15orf53Q8NAA6 179 aa9.1□□□□□ -0.95
SHMT1-205ENST00000395684 ZNF469Q96JG9 3925 aaPredicted RBP9.09□□□□□ -0.95
SHMT1-205ENST00000395684 TRGV1A0A0A0MS02 117 aa9.09□□□□□ -0.95
SHMT1-205ENST00000395684 HERVK_113P63121 156 aa9.09□□□□□ -0.95
SHMT1-205ENST00000395684 NTM-AS1Q6ZSK4 140 aa9.09□□□□□ -0.95
SHMT1-205ENST00000395684 SOSTDC1Q6X4U4 206 aa9.09□□□□□ -0.95
SHMT1-205ENST00000395684 TRAV13-1A0A0B4J241 112 aa9.08□□□□□ -0.96
SHMT1-205ENST00000395684 SMIM1B2RUZ4 78 aa9.08□□□□□ -0.96
SHMT1-205ENST00000395684 NDUFV3P56181 108 aaKnown RBP9.08□□□□□ -0.96
SHMT1-205ENST00000395684 IL17DQ8TAD2 202 aa9.08□□□□□ -0.96
SHMT1-205ENST00000395684 KRTAP10-9P60411 292 aa9.08□□□□□ -0.96
SHMT1-205ENST00000395684 FAM19A3Q7Z5A8 133 aa9.08□□□□□ -0.96
SHMT1-205ENST00000395684 CR1P17927 2039 aa9.07□□□□□ -0.96
SHMT1-205ENST00000395684 DEFB121Q5J5C9 76 aa9.07□□□□□ -0.96
SHMT1-205ENST00000395684 Q6ZTI0 123 aa9.07□□□□□ -0.96
SHMT1-205ENST00000395684 NAV2Q8IVL1 2488 aa9.06□□□□□ -0.96
SHMT1-205ENST00000395684 TTC32Q5I0X7 151 aa9.06□□□□□ -0.96
SHMT1-205ENST00000395684 Q6Q795 121 aa9.06□□□□□ -0.96
SHMT1-205ENST00000395684 STHQ8IWL8 128 aa9.06□□□□□ -0.96
SHMT1-205ENST00000395684 CSDC2Q9Y534 153 aaKnown RBP9.06□□□□□ -0.96
SHMT1-205ENST00000395684 RPL36AP83881 106 aaKnown RBP9.06□□□□□ -0.96
SHMT1-205ENST00000395684 ZNF843Q8N446 348 aa9.06□□□□□ -0.96
SHMT1-205ENST00000395684 RPL36ALQ969Q0 106 aaKnown RBP9.06□□□□□ -0.96
SHMT1-205ENST00000395684 CDC42SE2Q9NRR3 84 aa9.06□□□□□ -0.96
SHMT1-205ENST00000395684 C2CD3Q4AC94 2353 aa9.06□□□□□ -0.96
SHMT1-205ENST00000395684 F5H768 121 aa9.05□□□□□ -0.96
SHMT1-205ENST00000395684 K7EQD1 137 aa9.05□□□□□ -0.96
SHMT1-205ENST00000395684 TLN2Q9Y4G6 2542 aa9.05□□□□□ -0.96
SHMT1-205ENST00000395684 GAGE5Q13069 117 aa9.05□□□□□ -0.96
SHMT1-205ENST00000395684 GAGE6Q13070 117 aa9.05□□□□□ -0.96
SHMT1-205ENST00000395684 SHISA2Q6UWI4 295 aa9.05□□□□□ -0.96
SHMT1-205ENST00000395684 PRIMA1Q86XR5 153 aa9.05□□□□□ -0.96
SHMT1-205ENST00000395684 GAGE12JA6NER3 117 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 COX7A2LO14548 114 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 GAGE4Q13068 117 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 C11orf44Q8N8P7 122 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 Q96MF0 132 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 ITPR2Q14571 2701 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 NOTCH2Q04721 2471 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 WNK1Q9H4A3 2382 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 TRBV10-1A0A0K0K1A3 114 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 FAM240AA0A1B0GVK7 77 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 DAZ2Q13117 558 aaKnown RBP9.04□□□□□ -0.96
SHMT1-205ENST00000395684 MEIG1Q5JSS6 88 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 DAZ4Q86SG3 579 aaKnown RBP9.04□□□□□ -0.96
SHMT1-205ENST00000395684 DAZ3Q9NR90 486 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms