RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 TRAV8-3A0A0A6YYJ7 113 aa10.69□□□□□ -0.7
GPC3-202ENST00000394299 A8MZ25 164 aa10.69□□□□□ -0.7
GPC3-202ENST00000394299 UBE2D3P61077 147 aa10.69□□□□□ -0.7
GPC3-202ENST00000394299 UBE2D2P62837 147 aa10.69□□□□□ -0.7
GPC3-202ENST00000394299 TRGV4A0A0C4DH28 118 aa10.68□□□□□ -0.7
GPC3-202ENST00000394299 DEFB4AO15263 64 aa10.68□□□□□ -0.7
GPC3-202ENST00000394299 FBN1P35555 2871 aaKnown RBP10.68□□□□□ -0.7
GPC3-202ENST00000394299 SPANXA1Q9NS26 97 aa10.68□□□□□ -0.7
GPC3-202ENST00000394299 A0A0J9YY99 117 aa10.67□□□□□ -0.7
GPC3-202ENST00000394299 MRPS36P82909 103 aaKnown RBP10.67□□□□□ -0.7
GPC3-202ENST00000394299 X6R8D5 127 aa10.67□□□□□ -0.7
GPC3-202ENST00000394299 TRBV10-1A0A0K0K1A3 114 aa10.67□□□□□ -0.7
GPC3-202ENST00000394299 INSL3P51460 131 aa10.67□□□□□ -0.7
GPC3-202ENST00000394299 SRSF9Q13242 221 aaKnown RBP eCLIP10.67□□□□□ -0.79e-7■■□□□ 13.2
GPC3-202ENST00000394299 FHL2Q14192 279 aa10.67□□□□□ -0.7
GPC3-202ENST00000394299 LGALS3P17931 250 aaKnown RBP10.66□□□□□ -0.7
GPC3-202ENST00000394299 TAL2Q16559 108 aa10.66□□□□□ -0.7
GPC3-202ENST00000394299 DGAT2L7PQ6IED9 249 aa10.66□□□□□ -0.7
GPC3-202ENST00000394299 C12orf74Q32Q52 190 aa10.66□□□□□ -0.7
GPC3-202ENST00000394299 LEPROTO15243 131 aa10.65□□□□□ -0.7
GPC3-202ENST00000394299 COX6A2Q02221 97 aa10.65□□□□□ -0.7
GPC3-202ENST00000394299 DEFB135Q30KP9 77 aa10.65□□□□□ -0.7
GPC3-202ENST00000394299 K7ERU9 68 aa10.65□□□□□ -0.71
GPC3-202ENST00000394299 SPINK8P0C7L1 97 aa10.65□□□□□ -0.71
GPC3-202ENST00000394299 DAZ4Q86SG3 579 aaKnown RBP10.65□□□□□ -0.71
GPC3-202ENST00000394299 DAZ3Q9NR90 486 aaKnown RBP10.65□□□□□ -0.71
GPC3-202ENST00000394299 IGHV3-30-3P0DP02 117 aa10.64□□□□□ -0.71
GPC3-202ENST00000394299 GAGE10A6NGK3 116 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 UBE2D1P51668 147 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 SAMD5Q5TGI4 173 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 TRBV6-4A0A1B0GX49 114 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 A0A1W2PPM0 123 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 CRYBA4P53673 196 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 SBSPONQ8IVN8 264 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 CDKN2A-AS1Q9UH64 79 aa10.63□□□□□ -0.71
GPC3-202ENST00000394299 TINCRA0A1B0GVN0 87 aa10.62□□□□□ -0.71
GPC3-202ENST00000394299 C10orf126Q8N4M7 172 aa10.62□□□□□ -0.71
GPC3-202ENST00000394299 TIMM21Q9BVV7 248 aa10.62□□□□□ -0.71
GPC3-202ENST00000394299 TRAV13-1A0A0B4J241 112 aa10.62□□□□□ -0.71
GPC3-202ENST00000394299 IGLL5B9A064 214 aa10.61□□□□□ -0.71
GPC3-202ENST00000394299 GEMIN7Q9H840 131 aaKnown RBP10.61□□□□□ -0.71
GPC3-202ENST00000394299 CIDEAO60543 219 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 FAM222AQ5U5X8 452 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 OR5A1Q8NGJ0 315 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 STAB1Q9NY15 2570 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 IGHV3-30P01768 117 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 IGHV3-30-5P0DP03 117 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 LINC00242Q5T6M2 205 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 WFDC9Q8NEX5 89 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 PKD1L1Q8TDX9 2849 aa10.6□□□□□ -0.71
GPC3-202ENST00000394299 A0A096LPF7 62 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 IGHV1-58A0A0C4DH39 117 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 GAGE6Q13070 117 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 OXLD1Q5BKU9 147 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 KIR2DL5BQ8NHK3 375 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 CDC42SE2Q9NRR3 84 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 SPCS1Q9Y6A9 102 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 CYSRT1A8MQ03 144 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 APOMO95445 188 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 VSIG2Q96IQ7 327 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 TMEM243Q9BU79 118 aa10.59□□□□□ -0.71
GPC3-202ENST00000394299 K7EP34 96 aa10.58□□□□□ -0.72
GPC3-202ENST00000394299 KRTAP24-1Q3LI83 254 aa10.58□□□□□ -0.72
GPC3-202ENST00000394299 SFTA2Q6UW10 78 aa10.58□□□□□ -0.72
GPC3-202ENST00000394299 A0A0J9YXY3 114 aa10.58□□□□□ -0.72
GPC3-202ENST00000394299 G3V4G9 280 aa10.58□□□□□ -0.72
GPC3-202ENST00000394299 UBE2L6O14933 153 aa10.58□□□□□ -0.72
GPC3-202ENST00000394299 LINC00612Q8N6U2 182 aa10.58□□□□□ -0.72
GPC3-202ENST00000394299 ANK2Q01484 3957 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 IGKV3OR2-268A0A0C4DH90 116 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 A0A1B0GWB2 263 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 FABP2P12104 132 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 GTSF1LQ9H1H1 148 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 CMYA5Q8N3K9 4069 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 IGLV4-60A0A075B6I1 120 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 GYPEP15421 78 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 TMEM101Q96IK0 257 aa10.57□□□□□ -0.72
GPC3-202ENST00000394299 IGHV4-28A0A0C4DH34 117 aa10.56□□□□□ -0.72
GPC3-202ENST00000394299 IGHV4-30-4P0DP06 118 aa10.56□□□□□ -0.72
GPC3-202ENST00000394299 SPANXB1Q9NS25 103 aaPredicted RBP10.56□□□□□ -0.72
GPC3-202ENST00000394299 NDUFA12Q9UI09 145 aa10.56□□□□□ -0.72
GPC3-202ENST00000394299 TIRAPP58753 221 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 ADAMTSL4-AS1Q5T5F5 129 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 GTF2H5Q6ZYL4 71 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 PGPEP1Q9NXJ5 209 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 CSDC2Q9Y534 153 aaKnown RBP10.55□□□□□ -0.72
GPC3-202ENST00000394299 TRBV6-8A0A0A6YYG3 113 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 SMIM9A6NGZ8 99 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 MUSTN1Q8IVN3 82 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 CELA1Q9UNI1 258 aa10.55□□□□□ -0.72
GPC3-202ENST00000394299 CFC1BP0CG36 223 aa10.54□□□□□ -0.72
GPC3-202ENST00000394299 CFC1P0CG37 223 aa10.54□□□□□ -0.72
GPC3-202ENST00000394299 CHCHD5Q9BSY4 110 aa10.54□□□□□ -0.72
GPC3-202ENST00000394299 IGLV5-45A0A087WSX0 123 aa10.54□□□□□ -0.72
GPC3-202ENST00000394299 EIF4EBP3O60516 100 aaPredicted RBP10.54□□□□□ -0.72
GPC3-202ENST00000394299 APOC4P55056 127 aa10.54□□□□□ -0.72
GPC3-202ENST00000394299 NPC2P61916 151 aa10.54□□□□□ -0.72
GPC3-202ENST00000394299 LITAFQ99732 161 aa10.54□□□□□ -0.72
GPC3-202ENST00000394299 A4D1N5 150 aa10.53□□□□□ -0.72
GPC3-202ENST00000394299 ZNF625Q96I27 306 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms