RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 SCGB1C2P0DMR2 95 aa14.06□□□□□ -0.16
SHROOM1-202ENST00000378676 SBSPONQ8IVN8 264 aa14.06□□□□□ -0.16
SHROOM1-202ENST00000378676 CARD19Q96LW7 228 aa14.06□□□□□ -0.16
SHROOM1-202ENST00000378676 FLNAP21333 2647 aaKnown RBP14.05□□□□□ -0.16
SHROOM1-202ENST00000378676 VSIG2Q96IQ7 327 aa14.05□□□□□ -0.16
SHROOM1-202ENST00000378676 ADAMTSL4-AS1Q5T5F5 129 aa14.05□□□□□ -0.16
SHROOM1-202ENST00000378676 TMEM86BQ8N661 226 aa14.05□□□□□ -0.16
SHROOM1-202ENST00000378676 NDUFA12Q9UI09 145 aa14.05□□□□□ -0.16
SHROOM1-202ENST00000378676 CUBNO60494 3623 aa14.04□□□□□ -0.16
SHROOM1-202ENST00000378676 WFDC11Q8NEX6 87 aa14.04□□□□□ -0.16
SHROOM1-202ENST00000378676 IL17DQ8TAD2 202 aa14.04□□□□□ -0.16
SHROOM1-202ENST00000378676 ESM1Q9NQ30 184 aa14.04□□□□□ -0.16
SHROOM1-202ENST00000378676 STHQ8IWL8 128 aa14.04□□□□□ -0.16
SHROOM1-202ENST00000378676 TMEM262E9PQX1 116 aa14.03□□□□□ -0.16
SHROOM1-202ENST00000378676 ANAPC13Q9BS18 74 aa14.03□□□□□ -0.16
SHROOM1-202ENST00000378676 SETXQ7Z333 2677 aaKnown RBP14.03□□□□□ -0.16
SHROOM1-202ENST00000378676 GAGE5Q13069 117 aa14.02□□□□□ -0.16
SHROOM1-202ENST00000378676 GAGE6Q13070 117 aa14.02□□□□□ -0.16
SHROOM1-202ENST00000378676 TRGV1A0A0A0MS02 117 aa14.02□□□□□ -0.17
SHROOM1-202ENST00000378676 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.02□□□□□ -0.17
SHROOM1-202ENST00000378676 ZFAND6Q6FIF0 208 aa14.02□□□□□ -0.17
SHROOM1-202ENST00000378676 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.01□□□□□ -0.17
SHROOM1-202ENST00000378676 CDKN2A-AS1Q9UH64 79 aa14.01□□□□□ -0.17
SHROOM1-202ENST00000378676 TRAV25A0A0B4J276 109 aa14.01□□□□□ -0.17
SHROOM1-202ENST00000378676 CCL24O00175 119 aa14.01□□□□□ -0.17
SHROOM1-202ENST00000378676 SPANXDQ9BXN6 97 aa14.01□□□□□ -0.17
SHROOM1-202ENST00000378676 SPANXCQ9NY87 97 aa14.01□□□□□ -0.17
SHROOM1-202ENST00000378676 NPC2P61916 151 aa14□□□□□ -0.17
SHROOM1-202ENST00000378676 CCDC168Q8NDH2 2452 aa14□□□□□ -0.17
SHROOM1-202ENST00000378676 PRSS2P07478 247 aa14□□□□□ -0.17
SHROOM1-202ENST00000378676 Q1RN00 199 aa14□□□□□ -0.17
SHROOM1-202ENST00000378676 ANKRD29Q8N6D5 301 aa14□□□□□ -0.17
SHROOM1-202ENST00000378676 TEX29Q8N6K0 151 aa14□□□□□ -0.17
SHROOM1-202ENST00000378676 Q6ZTI0 123 aa13.99□□□□□ -0.17
SHROOM1-202ENST00000378676 NIPBLQ6KC79 2804 aaeCLIP13.99□□□□□ -0.17
SHROOM1-202ENST00000378676 LINC00694P0DN24 101 aa13.98□□□□□ -0.17
SHROOM1-202ENST00000378676 MIAQ16674 131 aa13.98□□□□□ -0.17
SHROOM1-202ENST00000378676 GCN1Q92616 2671 aaKnown RBP13.98□□□□□ -0.17
SHROOM1-202ENST00000378676 M0QXV9 152 aa13.98□□□□□ -0.17
SHROOM1-202ENST00000378676 COX6A2Q02221 97 aa13.98□□□□□ -0.17
SHROOM1-202ENST00000378676 CITED1Q99966 193 aa13.98□□□□□ -0.17
SHROOM1-202ENST00000378676 JMJD1CQ15652 2540 aa13.98□□□□□ -0.17
SHROOM1-202ENST00000378676 C9JAW5 83 aa13.97□□□□□ -0.17
SHROOM1-202ENST00000378676 CITED2Q99967 270 aaPredicted RBP13.97□□□□□ -0.17
SHROOM1-202ENST00000378676 SETD2Q9BYW2 2564 aaPredicted RBP13.97□□□□□ -0.17
SHROOM1-202ENST00000378676 IGLV5-45A0A087WSX0 123 aa13.97□□□□□ -0.17
SHROOM1-202ENST00000378676 SS18L2Q9UHA2 77 aa13.97□□□□□ -0.17
SHROOM1-202ENST00000378676 TRIAP1O43715 76 aa13.96□□□□□ -0.17
SHROOM1-202ENST00000378676 SLC25A20O43772 301 aa13.96□□□□□ -0.17
SHROOM1-202ENST00000378676 NDUFA7O95182 113 aa13.96□□□□□ -0.18
SHROOM1-202ENST00000378676 TIRAPP58753 221 aa13.96□□□□□ -0.18
SHROOM1-202ENST00000378676 DGAT2L7PQ6IED9 249 aa13.96□□□□□ -0.18
SHROOM1-202ENST00000378676 TMEM101Q96IK0 257 aa13.96□□□□□ -0.18
SHROOM1-202ENST00000378676 NOTCH3Q9UM47 2321 aa13.96□□□□□ -0.18
SHROOM1-202ENST00000378676 K7EQD1 137 aa13.95□□□□□ -0.18
SHROOM1-202ENST00000378676 NTM-AS1Q6ZSK4 140 aa13.95□□□□□ -0.18
SHROOM1-202ENST00000378676 WFDC10AQ9H1F0 79 aa13.95□□□□□ -0.18
SHROOM1-202ENST00000378676 DAND5Q8N907 189 aa13.95□□□□□ -0.18
SHROOM1-202ENST00000378676 LINC00242Q5T6M2 205 aa13.94□□□□□ -0.18
SHROOM1-202ENST00000378676 PDZD2O15018 2839 aa13.93□□□□□ -0.18
SHROOM1-202ENST00000378676 GIG44P09565 113 aaPredicted RBP13.93□□□□□ -0.18
SHROOM1-202ENST00000378676 ITPR2Q14571 2701 aa13.93□□□□□ -0.18
SHROOM1-202ENST00000378676 UNC79Q9P2D8 2635 aa13.93□□□□□ -0.18
SHROOM1-202ENST00000378676 TRBV30A0A0K0K1B3 111 aa13.93□□□□□ -0.18
SHROOM1-202ENST00000378676 NDUFA1O15239 70 aa13.93□□□□□ -0.18
SHROOM1-202ENST00000378676 RPL36AP83881 106 aaKnown RBP13.92□□□□□ -0.18
SHROOM1-202ENST00000378676 RPL36ALQ969Q0 106 aaKnown RBP13.92□□□□□ -0.18
SHROOM1-202ENST00000378676 TRAV4A0A0B4J268 109 aa13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 GAGE12JA6NER3 117 aa13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 GAGE4Q13068 117 aa13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 NOP10Q9NPE3 64 aaKnown RBP13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 ICOSQ9Y6W8 199 aa13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 NHLRC4P0CG21 123 aaPredicted RBP13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 KRTAP1-1Q07627 177 aa13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 ATXN8Q156A1 80 aa13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 LINC01620Q4KN68 170 aa13.91□□□□□ -0.18
SHROOM1-202ENST00000378676 TIMM17BO60830 172 aa13.9□□□□□ -0.18
SHROOM1-202ENST00000378676 IGLV5-39A0A0G2JS06 123 aa13.9□□□□□ -0.18
SHROOM1-202ENST00000378676 TRBV10-1A0A0K0K1A3 114 aa13.9□□□□□ -0.18
SHROOM1-202ENST00000378676 LINC01006Q8NI28 216 aa13.9□□□□□ -0.18
SHROOM1-202ENST00000378676 ACANP16112 2415 aa13.9□□□□□ -0.19
SHROOM1-202ENST00000378676 PLAC8L1A1L4L8 177 aa13.89□□□□□ -0.19
SHROOM1-202ENST00000378676 B5MCH6 92 aa13.89□□□□□ -0.19
SHROOM1-202ENST00000378676 HERVK_113P63121 156 aa13.89□□□□□ -0.19
SHROOM1-202ENST00000378676 TRAV13-1A0A0B4J241 112 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 GAGE2BQ13066 116 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 GAGE2EQ4V326 116 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 CFAP161Q6P656 301 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 Q6Q795 121 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 Q9H8V8 135 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 YAE1D1Q9NRH1 226 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 GAGE2DQ9UEU5 116 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 SMIM1B2RUZ4 78 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 DAZ2Q13117 558 aaKnown RBP13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 FAM19A3Q7Z5A8 133 aa13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 DAZ4Q86SG3 579 aaKnown RBP13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 ZNF625Q96I27 306 aaPredicted RBP13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 DAZ3Q9NR90 486 aaKnown RBP13.88□□□□□ -0.19
SHROOM1-202ENST00000378676 RPL35AP18077 110 aaKnown RBP13.87□□□□□ -0.19
SHROOM1-202ENST00000378676 NDUFV3P56181 108 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms