RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 IGF2-ASQ6U949 168 aa10.2□□□□□ -0.78
COL4A1-201ENST00000375820 CLUHP3Q96NS8 147 aa10.2□□□□□ -0.78
COL4A1-201ENST00000375820 LY6LH3BQJ8 138 aa10.2□□□□□ -0.78
COL4A1-201ENST00000375820 PTPRQQ9UMZ3 2332 aa10.2□□□□□ -0.78
COL4A1-201ENST00000375820 FAM30AQ9NZY2 134 aa10.19□□□□□ -0.78
COL4A1-201ENST00000375820 TMEM131Q92545 1883 aa10.19□□□□□ -0.78
COL4A1-201ENST00000375820 Q6ZSV7 163 aa10.19□□□□□ -0.78
COL4A1-201ENST00000375820 IL17DQ8TAD2 202 aa10.19□□□□□ -0.78
COL4A1-201ENST00000375820 FREM1Q5H8C1 2179 aa10.19□□□□□ -0.78
COL4A1-201ENST00000375820 C11orf1Q9H5F2 150 aa10.19□□□□□ -0.78
COL4A1-201ENST00000375820 SYCNQ0VAF6 134 aa10.18□□□□□ -0.78
COL4A1-201ENST00000375820 TRBV6-5A0A0K0K1A5 114 aa10.18□□□□□ -0.78
COL4A1-201ENST00000375820 LY6G6DO95868 133 aa10.18□□□□□ -0.78
COL4A1-201ENST00000375820 M0QY20 66 aa10.17□□□□□ -0.78
COL4A1-201ENST00000375820 MRPS12O15235 138 aaKnown RBP10.17□□□□□ -0.78
COL4A1-201ENST00000375820 C7orf33Q8WU49 177 aa10.17□□□□□ -0.78
COL4A1-201ENST00000375820 RETNLBQ9BQ08 111 aa10.17□□□□□ -0.78
COL4A1-201ENST00000375820 UBE2D3P61077 147 aa10.17□□□□□ -0.78
COL4A1-201ENST00000375820 SPANXB1Q9NS25 103 aaPredicted RBP10.17□□□□□ -0.78
COL4A1-201ENST00000375820 K7ERS5 55 aa10.16□□□□□ -0.78
COL4A1-201ENST00000375820 Q6ZS46 218 aa10.16□□□□□ -0.78
COL4A1-201ENST00000375820 PRORYQ9H606 182 aa10.16□□□□□ -0.78
COL4A1-201ENST00000375820 RNF185Q96GF1 192 aa10.16□□□□□ -0.78
COL4A1-201ENST00000375820 C2orf16Q68DN1 1984 aa10.15□□□□□ -0.78
COL4A1-201ENST00000375820 KIR2DL5BQ8NHK3 375 aa10.15□□□□□ -0.78
COL4A1-201ENST00000375820 SPRY4Q9C004 299 aa10.15□□□□□ -0.78
COL4A1-201ENST00000375820 Q6ZQY7 126 aa10.15□□□□□ -0.78
COL4A1-201ENST00000375820 MBD6Q96DN6 1003 aa10.15□□□□□ -0.78
COL4A1-201ENST00000375820 NANOS2P60321 138 aaKnown RBP10.15□□□□□ -0.79
COL4A1-201ENST00000375820 IBA57-AS1B1ANH7 110 aa10.14□□□□□ -0.79
COL4A1-201ENST00000375820 ZNF295-AS1Q8N0V1 137 aa10.14□□□□□ -0.79
COL4A1-201ENST00000375820 PRR14LQ5THK1 2151 aa10.14□□□□□ -0.79
COL4A1-201ENST00000375820 KPRPQ5T749 579 aaPredicted RBP10.14□□□□□ -0.79
COL4A1-201ENST00000375820 P0C879 139 aa10.14□□□□□ -0.79
COL4A1-201ENST00000375820 RBX1P62877 108 aa10.13□□□□□ -0.79
COL4A1-201ENST00000375820 PRR9Q5T870 116 aa10.13□□□□□ -0.79
COL4A1-201ENST00000375820 SMIM9A6NGZ8 99 aa10.13□□□□□ -0.79
COL4A1-201ENST00000375820 NDUFC2-KCTD14E9PQ53 114 aa10.13□□□□□ -0.79
COL4A1-201ENST00000375820 MRPL55Q7Z7F7 128 aaKnown RBP10.13□□□□□ -0.79
COL4A1-201ENST00000375820 UQCRQO14949 82 aa10.13□□□□□ -0.79
COL4A1-201ENST00000375820 GAS8-AS1O95177 125 aa10.13□□□□□ -0.79
COL4A1-201ENST00000375820 EDN2P20800 178 aa10.12□□□□□ -0.79
COL4A1-201ENST00000375820 A6NED7 52 aa10.12□□□□□ -0.79
COL4A1-201ENST00000375820 FBXL19-AS1Q494R0 122 aa10.12□□□□□ -0.79
COL4A1-201ENST00000375820 ODF3Q96PU9 254 aa10.12□□□□□ -0.79
COL4A1-201ENST00000375820 SMR3AQ99954 134 aa10.12□□□□□ -0.79
COL4A1-201ENST00000375820 MIFP14174 115 aa10.11□□□□□ -0.79
COL4A1-201ENST00000375820 FAM240AA0A1B0GVK7 77 aa10.11□□□□□ -0.79
COL4A1-201ENST00000375820 PLAC8L1A1L4L8 177 aa10.11□□□□□ -0.79
COL4A1-201ENST00000375820 SMIM11BQ8TCY0 68 aa10.11□□□□□ -0.79
COL4A1-201ENST00000375820 CELA1Q9UNI1 258 aa10.11□□□□□ -0.79
COL4A1-201ENST00000375820 H7C423 109 aa10.11□□□□□ -0.79
COL4A1-201ENST00000375820 TSHBP01222 138 aa10.11□□□□□ -0.79
COL4A1-201ENST00000375820 TRAV10A0A0B4J240 114 aa10.1□□□□□ -0.79
COL4A1-201ENST00000375820 OXLD1Q5BKU9 147 aa10.1□□□□□ -0.79
COL4A1-201ENST00000375820 ZNF843Q8N446 348 aa10.1□□□□□ -0.79
COL4A1-201ENST00000375820 NDUFA7O95182 113 aa10.09□□□□□ -0.79
COL4A1-201ENST00000375820 ZNF702PQ9H963 129 aa10.09□□□□□ -0.79
COL4A1-201ENST00000375820 KIAA1549LQ6ZVL6 1849 aa10.09□□□□□ -0.79
COL4A1-201ENST00000375820 TRBV6-4A0A1B0GX49 114 aa10.09□□□□□ -0.79
COL4A1-201ENST00000375820 PRR15LQ9BU68 103 aa10.09□□□□□ -0.79
COL4A1-201ENST00000375820 HIVEP2P31629 2446 aa10.09□□□□□ -0.79
COL4A1-201ENST00000375820 UBE2D2P62837 147 aa10.09□□□□□ -0.79
COL4A1-201ENST00000375820 LINC00959A0A1B0GUT2 108 aa10.08□□□□□ -0.8
COL4A1-201ENST00000375820 SORL1Q92673 2214 aa10.08□□□□□ -0.8
COL4A1-201ENST00000375820 TRBV27A0A0K0K1C4 114 aa10.08□□□□□ -0.8
COL4A1-201ENST00000375820 NUP210LQ5VU65 1888 aa10.08□□□□□ -0.8
COL4A1-201ENST00000375820 LRRC75A-AS1Q8N1F1 130 aa10.08□□□□□ -0.8
COL4A1-201ENST00000375820 X6R8D5 127 aa10.08□□□□□ -0.8
COL4A1-201ENST00000375820 RNASE3P12724 160 aaKnown RBP10.07□□□□□ -0.8
COL4A1-201ENST00000375820 SHISA2Q6UWI4 295 aa10.07□□□□□ -0.8
COL4A1-201ENST00000375820 C11orf21Q9P2W6 132 aa10.07□□□□□ -0.8
COL4A1-201ENST00000375820 C9orf116Q5BN46 136 aaPredicted RBP10.07□□□□□ -0.8
COL4A1-201ENST00000375820 TRBV30A0A0K0K1B3 111 aa10.07□□□□□ -0.8
COL4A1-201ENST00000375820 SERP1Q9Y6X1 66 aa10.07□□□□□ -0.8
COL4A1-201ENST00000375820 CCDC179H3BU77 68 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 IGLV4-69A0A075B6H9 119 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 CRIP3Q6Q6R5 217 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 DSCAMO60469 2012 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 CD164L2Q6UWJ8 174 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 LINC01006Q8NI28 216 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 CIRBP-AS1Q8TBR5 109 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 PLXNB1O43157 2135 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 M0R378 163 aa10.06□□□□□ -0.8
COL4A1-201ENST00000375820 MUC6Q6W4X9 2439 aa10.05□□□□□ -0.8
COL4A1-201ENST00000375820 CRIP2P52943 208 aaPredicted RBP10.05□□□□□ -0.8
COL4A1-201ENST00000375820 Q8N9L7 120 aa10.05□□□□□ -0.8
COL4A1-201ENST00000375820 IGLV2-11P01706 119 aa10.05□□□□□ -0.8
COL4A1-201ENST00000375820 EIF4EBP1Q13541 118 aaPredicted RBP10.05□□□□□ -0.8
COL4A1-201ENST00000375820 OTOGLQ3ZCN5 2332 aa10.05□□□□□ -0.8
COL4A1-201ENST00000375820 FAM19A3Q7Z5A8 133 aa10.05□□□□□ -0.8
COL4A1-201ENST00000375820 PCNX3Q9H6A9 2034 aa10.04□□□□□ -0.8
COL4A1-201ENST00000375820 NRACQ8N912 160 aa10.04□□□□□ -0.8
COL4A1-201ENST00000375820 PRR3P79522 188 aaKnown RBP10.04□□□□□ -0.8
COL4A1-201ENST00000375820 TIMM17BO60830 172 aa10.04□□□□□ -0.8
COL4A1-201ENST00000375820 U3KQK5 164 aa10.03□□□□□ -0.8
COL4A1-201ENST00000375820 ALPK3Q96L96 1907 aa10.03□□□□□ -0.8
COL4A1-201ENST00000375820 LOC107984640A0A0U1RRK4 108 aa10.03□□□□□ -0.8
COL4A1-201ENST00000375820 LINC00574Q9H8X3 128 aa10.03□□□□□ -0.8
COL4A1-201ENST00000375820 Q6ZVQ6 151 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms