RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 Q6JHZ5 121 aa6.74□□□□□ -1.33
SYNE1-209ENST00000367257 GTF3C1Q12789 2109 aa6.74□□□□□ -1.33
SYNE1-209ENST00000367257 EIF4EBP1Q13541 118 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-209ENST00000367257 TRBV6-4A0A1B0GX49 114 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 APRG1Q8IVJ8 170 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 FREM2Q5SZK8 3169 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 CFAP47Q6ZTR5 3102 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 NCR3O14931 201 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 CCDC168Q8NDH2 2452 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 MAP6D1Q9H9H5 199 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 Q9HAA7 133 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 MYO7BQ6PIF6 2116 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 A0A096LPF7 62 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 IGHV4-38-2P0DP08 117 aa6.73□□□□□ -1.33
SYNE1-209ENST00000367257 DMXL1Q9Y485 3027 aa6.72□□□□□ -1.33
SYNE1-209ENST00000367257 ZFHX2Q9C0A1 2572 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-209ENST00000367257 TNCP24821 2201 aa6.72□□□□□ -1.33
SYNE1-209ENST00000367257 K7EQG2 157 aa6.72□□□□□ -1.33
SYNE1-209ENST00000367257 IGHV4-4A0A075B6R2 117 aa6.72□□□□□ -1.33
SYNE1-209ENST00000367257 TRBV27A0A0K0K1C4 114 aa6.72□□□□□ -1.33
SYNE1-209ENST00000367257 COX17Q14061 63 aa6.72□□□□□ -1.33
SYNE1-209ENST00000367257 DHRS4-AS1Q9P1J3 65 aa6.72□□□□□ -1.33
SYNE1-209ENST00000367257 ZNF706Q9Y5V0 76 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-209ENST00000367257 IGHV4-30-2A0A087WSY4 118 aa6.71□□□□□ -1.33
SYNE1-209ENST00000367257 SOSTDC1Q6X4U4 206 aa6.71□□□□□ -1.33
SYNE1-209ENST00000367257 F8W735 103 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-209ENST00000367257 ZNF22P17026 224 aaPredicted RBP6.71□□□□□ -1.34
SYNE1-209ENST00000367257 SMAD5-AS1Q9Y6J3 95 aa6.71□□□□□ -1.34
SYNE1-209ENST00000367257 LINC00308Q8TCZ7 52 aa6.71□□□□□ -1.34
SYNE1-209ENST00000367257 RITA1Q96K30 269 aa6.71□□□□□ -1.34
SYNE1-209ENST00000367257 PIEZO1Q92508 2521 aa6.71□□□□□ -1.34
SYNE1-209ENST00000367257 IGHV3-30P01768 117 aa6.71□□□□□ -1.34
SYNE1-209ENST00000367257 IGHV3-30-5P0DP03 117 aa6.71□□□□□ -1.34
SYNE1-209ENST00000367257 TRAV7A0A075B6U4 112 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 TRBV7-7A0A0K0K1E9 115 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 LST1O00453 97 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 CRYGAP11844 174 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 DOCK7Q96N67 2140 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 IGLV4-3A0A075B6K6 122 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 ADORA2A-AS1P86434 159 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 CCDC140Q96MF4 163 aa6.7□□□□□ -1.34
SYNE1-209ENST00000367257 FRYQ5TBA9 3013 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 MIFP14174 115 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 REG3AQ06141 175 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 WDR87Q6ZQQ6 2873 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 FAM208BQ5VWN6 2430 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 NCKAP5O14513 1909 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 SPRY2O43597 315 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 C9orf85Q96MD7 179 aa6.69□□□□□ -1.34
SYNE1-209ENST00000367257 ADAMTS20P59510 1910 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 CUL9Q8IWT3 2517 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 IGLV10-54A0A075B6I4 117 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 KLK12Q9UKR0 248 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 F8P00451 2351 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 PHF3Q92576 2039 aaKnown RBP6.68□□□□□ -1.34
SYNE1-209ENST00000367257 DEFB136Q30KP8 78 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 SPRNQ5BIV9 151 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 USF3Q68DE3 2245 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 IGHV4-28A0A0C4DH34 117 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 UBE2D3P61077 147 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 UBE2D2P62837 147 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 SEM1Q6ZVN7 128 aa6.68□□□□□ -1.34
SYNE1-209ENST00000367257 H0Y9J4 135 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 CNFNQ9BYD5 112 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 KIAA2026Q5HYC2 2103 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 M0QY20 66 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 LY6LH3BQJ8 138 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-209ENST00000367257 A0A0C4DFX4 3053 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 EML6Q6ZMW3 1958 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 LINC01548A6NM66 108 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 Q6YL49 198 aa6.67□□□□□ -1.34
SYNE1-209ENST00000367257 CHCHD10Q8WYQ3 142 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-209ENST00000367257 SPG11Q96JI7 2443 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 ZFP36P26651 326 aaKnown RBP6.66□□□□□ -1.34
SYNE1-209ENST00000367257 SERTAD4-AS1Q5TG53 156 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 FAM19A3Q7Z5A8 133 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 ZFAND3Q9H8U3 227 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 SORL1Q92673 2214 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 WIPF1O43516 503 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 ZNF80P51504 273 aaPredicted RBP6.66□□□□□ -1.34
SYNE1-209ENST00000367257 MAPK1IP1LQ8NDC0 245 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 DYSFO75923 2080 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 TRBV6-8A0A0A6YYG3 113 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 TRBV7-6A0A0J9YX20 115 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 M0R378 163 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 OXLD1Q5BKU9 147 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 CHCHD7Q9BUK0 85 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 CASC2Q6XLA1 102 aa6.66□□□□□ -1.34
SYNE1-209ENST00000367257 LMO4P61968 165 aa6.65□□□□□ -1.34
SYNE1-209ENST00000367257 UNQ9165/PRO28630Q6UXU0 137 aa6.65□□□□□ -1.34
SYNE1-209ENST00000367257 RNF185Q96GF1 192 aa6.65□□□□□ -1.34
SYNE1-209ENST00000367257 FER1L5A0AVI2 2057 aa6.65□□□□□ -1.34
SYNE1-209ENST00000367257 CEP192Q8TEP8 1941 aa6.65□□□□□ -1.35
SYNE1-209ENST00000367257 LAMA5O15230 3695 aa6.65□□□□□ -1.35
SYNE1-209ENST00000367257 E7EUB6 86 aa6.65□□□□□ -1.35
SYNE1-209ENST00000367257 DEFB114Q30KQ6 69 aa6.65□□□□□ -1.35
SYNE1-209ENST00000367257 CD164L2Q6UWJ8 174 aa6.65□□□□□ -1.35
SYNE1-209ENST00000367257 ZNF295-AS1Q8N0V1 137 aa6.65□□□□□ -1.35
SYNE1-209ENST00000367257 IGKV4-1P06312 121 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms