RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TOMM6Q96B49 74 aa6.58□□□□□ -1.36
SYNE1-206ENST00000367253 DNAH12Q6ZR08 3092 aa6.57□□□□□ -1.36
SYNE1-206ENST00000367253 SPAG11BQ08648 103 aa6.57□□□□□ -1.36
SYNE1-206ENST00000367253 ESRGQ1W209 222 aa6.57□□□□□ -1.36
SYNE1-206ENST00000367253 BPY2O14599 106 aa6.57□□□□□ -1.36
SYNE1-206ENST00000367253 A0A0J9YXV3 536 aa6.56□□□□□ -1.36
SYNE1-206ENST00000367253 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-206ENST00000367253 RNASE3P12724 160 aaKnown RBP6.56□□□□□ -1.36
SYNE1-206ENST00000367253 NPBQ8NG41 125 aa6.56□□□□□ -1.36
SYNE1-206ENST00000367253 MUC7Q8TAX7 377 aa6.56□□□□□ -1.36
SYNE1-206ENST00000367253 ZFAND3Q9H8U3 227 aa6.56□□□□□ -1.36
SYNE1-206ENST00000367253 ZNF73O43830 326 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-206ENST00000367253 IGKV4-1P06312 121 aa6.56□□□□□ -1.36
SYNE1-206ENST00000367253 C2CD3Q4AC94 2353 aa6.56□□□□□ -1.36
SYNE1-206ENST00000367253 CFAP126Q5VTH2 177 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-206ENST00000367253 IGKV1-6A0A0C4DH72 117 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 IGKV2-29A2NJV5 120 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-206ENST00000367253 ODF3BA8MYP8 253 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 LMO4P61968 165 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 Q9UF83 564 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 EBI3Q14213 229 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 ZNF581Q9P0T4 197 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 PCDH15Q96QU1 1955 aa6.55□□□□□ -1.36
SYNE1-206ENST00000367253 TRBV10-1A0A0K0K1A3 114 aa6.54□□□□□ -1.36
SYNE1-206ENST00000367253 RPL28P46779 137 aaKnown RBP6.54□□□□□ -1.36
SYNE1-206ENST00000367253 FGF23Q9GZV9 251 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-206ENST00000367253 Q8N6K4 173 aa6.54□□□□□ -1.36
SYNE1-206ENST00000367253 HIGD2AQ9BW72 106 aa6.54□□□□□ -1.36
SYNE1-206ENST00000367253 PLXND1Q9Y4D7 1925 aa6.54□□□□□ -1.36
SYNE1-206ENST00000367253 UFSP1Q6NVU6 142 aa6.54□□□□□ -1.36
SYNE1-206ENST00000367253 PRM2P04554 102 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 TMEM254Q8TBM7 123 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 IGLV10-54A0A075B6I4 117 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 TMEM223A0PJW6 202 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 H0Y9J4 135 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 DIRC1Q969H9 104 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 COL4A3Q01955 1670 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 HTTP42858 3142 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 WI2-2373I1.2A0A1W2PRP0 233 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 LINC00269Q8N2A0 174 aa6.53□□□□□ -1.36
SYNE1-206ENST00000367253 Q6ZR03 302 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 C16orf90A8MZG2 172 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 MIAQ16674 131 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 LCA10Q71F78 164 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 MALRD1Q5VYJ5 2156 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 NCKAP5O14513 1909 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 CEP192Q8TEP8 1941 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 IGHV7-81A0A0B4J1V7 117 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 C11orf86A6NJI1 115 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 CTRLP40313 264 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 C6orf99Q4VX62 202 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 A0A087WVE0 104 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 FSTL3O95633 263 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 SPAG11AQ6PDA7 123 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 SPINT4Q6UDR6 99 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 FAM19A1Q7Z5A9 133 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 PCNX3Q9H6A9 2034 aa6.52□□□□□ -1.37
SYNE1-206ENST00000367253 C8orf87E5RJ46 101 aa6.51□□□□□ -1.37
SYNE1-206ENST00000367253 PSMG3-AS1Q96PY0 264 aa6.51□□□□□ -1.37
SYNE1-206ENST00000367253 MSRB1Q9NZV6 116 aa6.51□□□□□ -1.37
SYNE1-206ENST00000367253 WT1-ASQ06250 92 aa6.51□□□□□ -1.37
SYNE1-206ENST00000367253 TRAV7A0A075B6U4 112 aa6.51□□□□□ -1.37
SYNE1-206ENST00000367253 SEM1Q6ZVN7 128 aa6.51□□□□□ -1.37
SYNE1-206ENST00000367253 FN1P02751 2386 aaKnown RBP6.51□□□□□ -1.37
SYNE1-206ENST00000367253 RPL39LQ96EH5 51 aaKnown RBP6.51□□□□□ -1.37
SYNE1-206ENST00000367253 CTSZQ9UBR2 303 aa6.51□□□□□ -1.37
SYNE1-206ENST00000367253 KTN1-AS1Q86SY8 53 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 MAP6D1Q9H9H5 199 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 FLG2Q5D862 2391 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-206ENST00000367253 TRBV7-3A0A075B6L6 115 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 GNRH2O43555 120 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 KPRPQ5T749 579 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-206ENST00000367253 Q8N9W7 124 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 DEFB114Q30KQ6 69 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 MTORP42345 2549 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 A0A0J9YWU9 116 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 IGHV4-30-4P0DP06 118 aa6.5□□□□□ -1.37
SYNE1-206ENST00000367253 FRMD6-AS1P0C7T7 363 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 TPSG1Q9NRR2 321 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 CRYGAP11844 174 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 C17orf58Q2M2W7 97 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 ANKHD1Q8IWZ3 2542 aaKnown RBP6.49□□□□□ -1.37
SYNE1-206ENST00000367253 BPTFQ12830 3046 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 JMJD1CQ15652 2540 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 SYCNQ0VAF6 134 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 TMEM131Q92545 1883 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 PKD1L2Q7Z442 2459 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 ZFYVE26Q68DK2 2539 aa6.49□□□□□ -1.37
SYNE1-206ENST00000367253 NCR3O14931 201 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 PIK3CD-AS1Q5SR53 167 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 MIR7-3HGQ8N6C7 128 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 CENPFP49454 3210 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 ZNF22P17026 224 aaPredicted RBP6.48□□□□□ -1.37
SYNE1-206ENST00000367253 RNF185Q96GF1 192 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 CDIP1Q9H305 208 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 ADAMTS9Q9P2N4 1935 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 POM121L12Q8N7R1 296 aa6.48□□□□□ -1.37
SYNE1-206ENST00000367253 COX7BP24311 80 aa6.47□□□□□ -1.37
SYNE1-206ENST00000367253 C1orf147Q96MC9 270 aaPredicted RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms