RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TCL1BO95988 128 aa13.9□□□□□ -0.18
COL9A3-201ENST00000343916 GIG44P09565 113 aaPredicted RBP13.9□□□□□ -0.18
COL9A3-201ENST00000343916 CFC1BP0CG36 223 aa13.9□□□□□ -0.18
COL9A3-201ENST00000343916 CFC1P0CG37 223 aa13.9□□□□□ -0.18
COL9A3-201ENST00000343916 DNAJC30Q96LL9 226 aa13.9□□□□□ -0.18
COL9A3-201ENST00000343916 SPANXA1Q9NS26 97 aa13.9□□□□□ -0.18
COL9A3-201ENST00000343916 HIVEP2P31629 2446 aa13.9□□□□□ -0.18
COL9A3-201ENST00000343916 A8MZ25 164 aa13.89□□□□□ -0.19
COL9A3-201ENST00000343916 RPL35AP18077 110 aaKnown RBP13.89□□□□□ -0.19
COL9A3-201ENST00000343916 TIMM21Q9BVV7 248 aa13.89□□□□□ -0.19
COL9A3-201ENST00000343916 A0A1B0GV72 72 aa13.89□□□□□ -0.19
COL9A3-201ENST00000343916 ATP6V0E2Q8NHE4 81 aa13.89□□□□□ -0.19
COL9A3-201ENST00000343916 CDIP1Q9H305 208 aa13.89□□□□□ -0.19
COL9A3-201ENST00000343916 NOP10Q9NPE3 64 aaKnown RBP13.89□□□□□ -0.19
COL9A3-201ENST00000343916 TMEM263Q8WUH6 116 aaKnown RBP13.88□□□□□ -0.19
COL9A3-201ENST00000343916 CRYBA4P53673 196 aa13.88□□□□□ -0.19
COL9A3-201ENST00000343916 IGLV1-51P01701 117 aa13.87□□□□□ -0.19
COL9A3-201ENST00000343916 SPINK8P0C7L1 97 aa13.87□□□□□ -0.19
COL9A3-201ENST00000343916 CARD19Q96LW7 228 aa13.87□□□□□ -0.19
COL9A3-201ENST00000343916 NOTCH2Q04721 2471 aa13.86□□□□□ -0.19
COL9A3-201ENST00000343916 A0A0J9YXY3 114 aa13.86□□□□□ -0.19
COL9A3-201ENST00000343916 A4D1N5 150 aa13.86□□□□□ -0.19
COL9A3-201ENST00000343916 HILS1P60008 231 aa13.86□□□□□ -0.19
COL9A3-201ENST00000343916 CKS1BP61024 79 aa13.86□□□□□ -0.19
COL9A3-201ENST00000343916 LYRM7Q5U5X0 104 aa13.86□□□□□ -0.19
COL9A3-201ENST00000343916 C19orf73Q9NVV2 129 aa13.86□□□□□ -0.19
COL9A3-201ENST00000343916 TINCRA0A1B0GVN0 87 aa13.85□□□□□ -0.19
COL9A3-201ENST00000343916 SCGB1C2P0DMR2 95 aa13.85□□□□□ -0.19
COL9A3-201ENST00000343916 LINC00694P0DN24 101 aa13.85□□□□□ -0.19
COL9A3-201ENST00000343916 IGHV1-58A0A0C4DH39 117 aa13.85□□□□□ -0.19
COL9A3-201ENST00000343916 MUSTN1Q8IVN3 82 aa13.85□□□□□ -0.19
COL9A3-201ENST00000343916 K7EQD1 137 aa13.84□□□□□ -0.19
COL9A3-201ENST00000343916 EIF4EBP3O60516 100 aaPredicted RBP13.84□□□□□ -0.19
COL9A3-201ENST00000343916 MT-ATP8P03928 68 aa13.84□□□□□ -0.19
COL9A3-201ENST00000343916 DGAT2L7PQ6IED9 249 aa13.84□□□□□ -0.19
COL9A3-201ENST00000343916 TEN1Q86WV5 123 aa13.84□□□□□ -0.19
COL9A3-201ENST00000343916 PRO1854Q9UHT4 67 aa13.84□□□□□ -0.19
COL9A3-201ENST00000343916 PPDPFLQ8WWR9 84 aa13.83□□□□□ -0.2
COL9A3-201ENST00000343916 GEMIN7Q9H840 131 aaKnown RBP13.83□□□□□ -0.2
COL9A3-201ENST00000343916 PLAC8L1A1L4L8 177 aa13.83□□□□□ -0.2
COL9A3-201ENST00000343916 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.83□□□□□ -0.2
COL9A3-201ENST00000343916 VSIG2Q96IQ7 327 aa13.83□□□□□ -0.2
COL9A3-201ENST00000343916 GAGE12JA6NER3 117 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 H7C2G1 150 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 NDUFA7O95182 113 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 XGP55808 180 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 RPL36AP83881 106 aaKnown RBP13.82□□□□□ -0.2
COL9A3-201ENST00000343916 GAGE4Q13068 117 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 GAGE5Q13069 117 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 NTM-AS1Q6ZSK4 140 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 RPL36ALQ969Q0 106 aaKnown RBP13.82□□□□□ -0.2
COL9A3-201ENST00000343916 CDKN2A-AS1Q9UH64 79 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 NDUFA12Q9UI09 145 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 TRAV4A0A0B4J268 109 aa13.82□□□□□ -0.2
COL9A3-201ENST00000343916 OTOGQ6ZRI0 2925 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 FN1P02751 2386 aaKnown RBP13.81□□□□□ -0.2
COL9A3-201ENST00000343916 TRBV20-1A0A075B6N2 111 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 GAGE7O76087 117 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 GAGE12FP0CL80 117 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 GAGE12GP0CL81 117 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 GAGE12IP0CL82 117 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 ANKRD29Q8N6D5 301 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 LITAFQ99732 161 aa13.81□□□□□ -0.2
COL9A3-201ENST00000343916 KRTAP10-3P60369 221 aa13.8□□□□□ -0.2
COL9A3-201ENST00000343916 COX6A2Q02221 97 aa13.8□□□□□ -0.2
COL9A3-201ENST00000343916 TRGV2A0A075B6R0 118 aa13.8□□□□□ -0.2
COL9A3-201ENST00000343916 ADAMTSL4-AS1Q5T5F5 129 aa13.8□□□□□ -0.2
COL9A3-201ENST00000343916 DAZ2Q13117 558 aaKnown RBP13.79□□□□□ -0.2
COL9A3-201ENST00000343916 CSNK1G2-AS1Q8NCQ2 148 aa13.79□□□□□ -0.2
COL9A3-201ENST00000343916 TRBV10-1A0A0K0K1A3 114 aa13.79□□□□□ -0.2
COL9A3-201ENST00000343916 PRSS2P07478 247 aa13.79□□□□□ -0.2
COL9A3-201ENST00000343916 CMC4P56277 68 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-201ENST00000343916 C16orf74Q96GX8 76 aa13.79□□□□□ -0.2
COL9A3-201ENST00000343916 LOC100131303A0A0U1RQF7 123 aa13.78□□□□□ -0.2
COL9A3-201ENST00000343916 SBSPONQ8IVN8 264 aa13.78□□□□□ -0.2
COL9A3-201ENST00000343916 NPC2P61916 151 aa13.78□□□□□ -0.2
COL9A3-201ENST00000343916 DAZ4Q86SG3 579 aaKnown RBP13.77□□□□□ -0.21
COL9A3-201ENST00000343916 DAZ3Q9NR90 486 aaKnown RBP13.77□□□□□ -0.21
COL9A3-201ENST00000343916 C9JAW5 83 aa13.76□□□□□ -0.21
COL9A3-201ENST00000343916 FAM110AQ9BQ89 295 aa13.76□□□□□ -0.21
COL9A3-201ENST00000343916 TRAV13-1A0A0B4J241 112 aa13.76□□□□□ -0.21
COL9A3-201ENST00000343916 IGHV3-33P01772 117 aa13.76□□□□□ -0.21
COL9A3-201ENST00000343916 LINC00242Q5T6M2 205 aa13.75□□□□□ -0.21
COL9A3-201ENST00000343916 TMEM101Q96IK0 257 aa13.75□□□□□ -0.21
COL9A3-201ENST00000343916 SLC25A20O43772 301 aa13.75□□□□□ -0.21
COL9A3-201ENST00000343916 ZFAND6Q6FIF0 208 aa13.74□□□□□ -0.21
COL9A3-201ENST00000343916 ERG28Q9UKR5 140 aa13.74□□□□□ -0.21
COL9A3-201ENST00000343916 IGLV5-45A0A087WSX0 123 aa13.74□□□□□ -0.21
COL9A3-201ENST00000343916 TIRAPP58753 221 aa13.74□□□□□ -0.21
COL9A3-201ENST00000343916 Q1RN00 199 aa13.74□□□□□ -0.21
COL9A3-201ENST00000343916 A0A0B4J2C4 111 aa13.73□□□□□ -0.21
COL9A3-201ENST00000343916 PF4P02776 101 aa13.73□□□□□ -0.21
COL9A3-201ENST00000343916 DAND5Q8N907 189 aa13.73□□□□□ -0.21
COL9A3-201ENST00000343916 VWFP04275 2813 aa13.73□□□□□ -0.21
COL9A3-201ENST00000343916 TRAV26-1A0A087WT03 109 aa13.73□□□□□ -0.21
COL9A3-201ENST00000343916 LY6G6DO95868 133 aa13.73□□□□□ -0.21
COL9A3-201ENST00000343916 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.71□□□□□ -0.21
COL9A3-201ENST00000343916 TRGV4A0A0C4DH28 118 aa13.71□□□□□ -0.21
COL9A3-201ENST00000343916 HERVK_113P63121 156 aa13.71□□□□□ -0.21
COL9A3-201ENST00000343916 CDC42SE2Q9NRR3 84 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms