RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 HIST2H2BCQ6DN03 193 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 TSHBP01222 138 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 Q6ZTI0 123 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 MUC4Q99102 2169 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 IGKV3D-7A0A0C4DH55 119 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 CRLF1O75462 422 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 PIK3CD-AS1Q5SR53 167 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 DCANP1Q8TF63 244 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 PSMG3-AS1Q96PY0 264 aa9.2□□□□□ -0.94
SNRNP48-201ENST00000342415 TRAV4A0A0B4J268 109 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 KLLNB2CW77 178 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 COX8CQ7Z4L0 72 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 ATP6V0E2Q8NHE4 81 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 SND1-IT1Q9HBX3 110 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 IGLV4-69A0A075B6H9 119 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 NDUFA7O95182 113 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 ATP5G1P05496 136 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 CCL24O00175 119 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 DMXL1Q9Y485 3027 aa9.19□□□□□ -0.94
SNRNP48-201ENST00000342415 COL12A1Q99715 3063 aa9.18□□□□□ -0.94
SNRNP48-201ENST00000342415 MIR7-3HGQ8N6C7 128 aa9.18□□□□□ -0.94
SNRNP48-201ENST00000342415 SS18Q15532 418 aa9.17□□□□□ -0.94
SNRNP48-201ENST00000342415 MIAQ16674 131 aa9.17□□□□□ -0.94
SNRNP48-201ENST00000342415 DEFB4AO15263 64 aa9.17□□□□□ -0.94
SNRNP48-201ENST00000342415 INAFM2P0DMQ5 153 aa9.17□□□□□ -0.94
SNRNP48-201ENST00000342415 UBE2D1P51668 147 aa9.17□□□□□ -0.94
SNRNP48-201ENST00000342415 SPATA25Q9BR10 227 aa9.17□□□□□ -0.94
SNRNP48-201ENST00000342415 MAP6D1Q9H9H5 199 aa9.16□□□□□ -0.94
SNRNP48-201ENST00000342415 ZFHX4Q86UP3 3567 aa9.16□□□□□ -0.94
SNRNP48-201ENST00000342415 POM121L12Q8N7R1 296 aa9.16□□□□□ -0.94
SNRNP48-201ENST00000342415 A0A0B4J2C4 111 aa9.16□□□□□ -0.94
SNRNP48-201ENST00000342415 ANGP03950 147 aaKnown RBP9.16□□□□□ -0.94
SNRNP48-201ENST00000342415 SOCS3O14543 225 aa9.16□□□□□ -0.94
SNRNP48-201ENST00000342415 TRAV13-2A0A0B4J235 113 aa9.15□□□□□ -0.94
SNRNP48-201ENST00000342415 K7EQD1 137 aa9.15□□□□□ -0.94
SNRNP48-201ENST00000342415 NDUFV3P56181 108 aaKnown RBP9.15□□□□□ -0.94
SNRNP48-201ENST00000342415 PSMB8P28062 276 aa9.15□□□□□ -0.95
SNRNP48-201ENST00000342415 DMDP11532 3685 aa9.14□□□□□ -0.95
SNRNP48-201ENST00000342415 F5H768 121 aa9.14□□□□□ -0.95
SNRNP48-201ENST00000342415 LECT2O14960 151 aa9.14□□□□□ -0.95
SNRNP48-201ENST00000342415 J3QLI3 93 aa9.14□□□□□ -0.95
SNRNP48-201ENST00000342415 HAMPP81172 84 aa9.14□□□□□ -0.95
SNRNP48-201ENST00000342415 DEFB113Q30KQ7 82 aa9.14□□□□□ -0.95
SNRNP48-201ENST00000342415 TRBV6-5A0A0K0K1A5 114 aa9.13□□□□□ -0.95
SNRNP48-201ENST00000342415 H3BT86 120 aa9.13□□□□□ -0.95
SNRNP48-201ENST00000342415 ADAMTSL4-AS1Q5T5F5 129 aa9.13□□□□□ -0.95
SNRNP48-201ENST00000342415 WFDC10AQ9H1F0 79 aa9.13□□□□□ -0.95
SNRNP48-201ENST00000342415 Q9UF83 564 aa9.13□□□□□ -0.95
SNRNP48-201ENST00000342415 TMEM263Q8WUH6 116 aaKnown RBP9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 C9orf85Q96MD7 179 aa9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 DAZ2Q13117 558 aaKnown RBP9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 DAZ4Q86SG3 579 aaKnown RBP9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 LINC00308Q8TCZ7 52 aa9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 CITED2Q99967 270 aaPredicted RBP9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 C14orf132Q9NPU4 83 aa9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 DAZ3Q9NR90 486 aaKnown RBP9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 CFAP46Q8IYW2 2715 aa9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 SLPIP03973 132 aa9.12□□□□□ -0.95
SNRNP48-201ENST00000342415 IGLV1-40P01703 118 aa9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 GYPEP15421 78 aa9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 SMCPP49901 116 aaPredicted RBP9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 COX7B2Q8TF08 81 aa9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 DNAJC30Q96LL9 226 aa9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 UBE2D3P61077 147 aa9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 UBE2D2P62837 147 aa9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 MRPL23Q16540 153 aaKnown RBP9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 WFDC11Q8NEX6 87 aa9.11□□□□□ -0.95
SNRNP48-201ENST00000342415 CHD6Q8TD26 2715 aa9.1□□□□□ -0.95
SNRNP48-201ENST00000342415 ATRQ13535 2644 aa9.1□□□□□ -0.95
SNRNP48-201ENST00000342415 LOC100131303A0A0U1RQF7 123 aa9.1□□□□□ -0.95
SNRNP48-201ENST00000342415 CCDC179H3BU77 68 aa9.1□□□□□ -0.95
SNRNP48-201ENST00000342415 TRBV30A0A0K0K1B3 111 aa9.09□□□□□ -0.95
SNRNP48-201ENST00000342415 Q6ZSN1 163 aa9.09□□□□□ -0.95
SNRNP48-201ENST00000342415 H7C423 109 aa9.09□□□□□ -0.96
SNRNP48-201ENST00000342415 DEFB114Q30KQ6 69 aa9.09□□□□□ -0.96
SNRNP48-201ENST00000342415 PRORYQ9H606 182 aa9.09□□□□□ -0.96
SNRNP48-201ENST00000342415 LAMA5O15230 3695 aa9.08□□□□□ -0.96
SNRNP48-201ENST00000342415 HERV-K104P63124 156 aa9.08□□□□□ -0.96
SNRNP48-201ENST00000342415 UBE2D4Q9Y2X8 147 aa9.08□□□□□ -0.96
SNRNP48-201ENST00000342415 DAD1P61803 113 aa9.08□□□□□ -0.96
SNRNP48-201ENST00000342415 KIF25-AS1Q9Y6Z4 181 aa9.08□□□□□ -0.96
SNRNP48-201ENST00000342415 CDIP1Q9H305 208 aa9.08□□□□□ -0.96
SNRNP48-201ENST00000342415 F8P00451 2351 aa9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 DPH3Q96FX2 82 aa9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 CMC4P56277 68 aaPredicted RBP9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 OVOL2Q9BRP0 275 aa9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 A0A1B0GX51 115 aa9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 COX7A2LO14548 114 aa9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 LINC00315P59091 139 aa9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 SDIM1Q6ZPB5 146 aa9.07□□□□□ -0.96
SNRNP48-201ENST00000342415 ODF3Q96PU9 254 aa9.06□□□□□ -0.96
SNRNP48-201ENST00000342415 RPL32P62910 135 aaKnown RBP9.06□□□□□ -0.96
SNRNP48-201ENST00000342415 PRO0461Q9UI25 63 aa9.06□□□□□ -0.96
SNRNP48-201ENST00000342415 ASH1LQ9NR48 2969 aaKnown RBP9.06□□□□□ -0.96
SNRNP48-201ENST00000342415 LINC00694P0DN24 101 aa9.05□□□□□ -0.96
SNRNP48-201ENST00000342415 COX6A2Q02221 97 aa9.05□□□□□ -0.96
SNRNP48-201ENST00000342415 COL27A1Q8IZC6 1860 aaPredicted RBP9.05□□□□□ -0.96
SNRNP48-201ENST00000342415 FLNAP21333 2647 aaKnown RBP9.05□□□□□ -0.96
SNRNP48-201ENST00000342415 MRPS36P82909 103 aaKnown RBP9.05□□□□□ -0.96
SNRNP48-201ENST00000342415 J3QKU1 62 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms