RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 UBE2WQ96B02 151 aa14.91□□□□□ -0.02
SDC3-202ENST00000339394 CDC42SE2Q9NRR3 84 aa14.91□□□□□ -0.02
SDC3-202ENST00000339394 ENHOQ6UWT2 76 aa14.9□□□□□ -0.02
SDC3-202ENST00000339394 CHCHD1Q96BP2 118 aaKnown RBP14.9□□□□□ -0.02
SDC3-202ENST00000339394 SPANXA1Q9NS26 97 aa14.9□□□□□ -0.02
SDC3-202ENST00000339394 PRR34Q9NV39 138 aa14.9□□□□□ -0.02
SDC3-202ENST00000339394 CLPSL2Q6UWE3 100 aa14.9□□□□□ -0.02
SDC3-202ENST00000339394 TOMM6Q96B49 74 aa14.9□□□□□ -0.02
SDC3-202ENST00000339394 C1orf196B1AJZ1 125 aa14.89□□□□□ -0.03
SDC3-202ENST00000339394 REG3AQ06141 175 aa14.89□□□□□ -0.03
SDC3-202ENST00000339394 ZNF664Q8N3J9 261 aa14.89□□□□□ -0.03
SDC3-202ENST00000339394 Q9HAA7 133 aa14.89□□□□□ -0.03
SDC3-202ENST00000339394 PYGO1Q9Y3Y4 419 aa14.89□□□□□ -0.03
SDC3-202ENST00000339394 TRAV8-3A0A0A6YYJ7 113 aa14.88□□□□□ -0.03
SDC3-202ENST00000339394 CRPP02741 224 aa14.88□□□□□ -0.03
SDC3-202ENST00000339394 PMCHL1Q16048 86 aa14.88□□□□□ -0.03
SDC3-202ENST00000339394 C6orf223Q8N319 242 aa14.88□□□□□ -0.03
SDC3-202ENST00000339394 FAM104AQ969W3 186 aa14.88□□□□□ -0.03
SDC3-202ENST00000339394 OPRPNQ99935 248 aaPredicted RBP14.88□□□□□ -0.03
SDC3-202ENST00000339394 A0A096LNJ9 63 aa14.87□□□□□ -0.03
SDC3-202ENST00000339394 SERF1AO75920 110 aa14.87□□□□□ -0.03
SDC3-202ENST00000339394 LINC00310P59036 64 aa14.87□□□□□ -0.03
SDC3-202ENST00000339394 C1orf134Q5TEV5 83 aa14.87□□□□□ -0.03
SDC3-202ENST00000339394 IGIPA6NJ69 53 aa14.86□□□□□ -0.03
SDC3-202ENST00000339394 Q6ZUT4 128 aa14.86□□□□□ -0.03
SDC3-202ENST00000339394 RNASE13Q5GAN3 156 aaKnown RBP14.85□□□□□ -0.03
SDC3-202ENST00000339394 NUPR1O60356 82 aa14.85□□□□□ -0.03
SDC3-202ENST00000339394 HBDP02042 147 aa14.85□□□□□ -0.03
SDC3-202ENST00000339394 MRPS36P82909 103 aaKnown RBP14.85□□□□□ -0.03
SDC3-202ENST00000339394 IGLV4-3A0A075B6K6 122 aa14.84□□□□□ -0.03
SDC3-202ENST00000339394 IGKV3OR2-268A0A0C4DH90 116 aa14.84□□□□□ -0.03
SDC3-202ENST00000339394 LINC01549A6NIU2 74 aa14.84□□□□□ -0.03
SDC3-202ENST00000339394 HSBP1O75506 76 aa14.84□□□□□ -0.03
SDC3-202ENST00000339394 MIAQ16674 131 aa14.84□□□□□ -0.03
SDC3-202ENST00000339394 NFE4Q86UQ8 179 aa14.84□□□□□ -0.03
SDC3-202ENST00000339394 SCGB3A1Q96QR1 104 aa14.84□□□□□ -0.03
SDC3-202ENST00000339394 ERASQ7Z444 233 aa14.83□□□□□ -0.04
SDC3-202ENST00000339394 TIMM17AQ99595 171 aa14.83□□□□□ -0.04
SDC3-202ENST00000339394 FAM19A2Q8N3H0 131 aa14.82□□□□□ -0.04
SDC3-202ENST00000339394 DNAH17Q9UFH2 4485 aa14.82□□□□□ -0.04
SDC3-202ENST00000339394 FRAS1Q86XX4 4008 aa14.82□□□□□ -0.04
SDC3-202ENST00000339394 Q6ZRN7 208 aaPredicted RBP14.81□□□□□ -0.04
SDC3-202ENST00000339394 TMEM141Q96I45 108 aa14.81□□□□□ -0.04
SDC3-202ENST00000339394 IGLV10-54A0A075B6I4 117 aa14.81□□□□□ -0.04
SDC3-202ENST00000339394 IGKV2D-24A0A075B6R9 120 aa14.81□□□□□ -0.04
SDC3-202ENST00000339394 NPSP0C0P6 89 aa14.81□□□□□ -0.04
SDC3-202ENST00000339394 TRAV8-4A0A0B4J246 113 aa14.8□□□□□ -0.04
SDC3-202ENST00000339394 RTL8CO15255 209 aa14.8□□□□□ -0.04
SDC3-202ENST00000339394 C1orf43Q9BWL3 253 aa14.8□□□□□ -0.04
SDC3-202ENST00000339394 PDZD11Q5EBL8 140 aa14.79□□□□□ -0.04
SDC3-202ENST00000339394 RMI2Q96E14 147 aa14.79□□□□□ -0.04
SDC3-202ENST00000339394 LINC00959A0A1B0GUT2 108 aa14.78□□□□□ -0.04
SDC3-202ENST00000339394 Q6ZN92 141 aa14.78□□□□□ -0.04
SDC3-202ENST00000339394 FAT2Q9NYQ8 4349 aa14.78□□□□□ -0.04
SDC3-202ENST00000339394 TRAV13-1A0A0B4J241 112 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 NDUFA6P56556 154 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 COA6Q5JTJ3 125 aaKnown RBP14.77□□□□□ -0.04
SDC3-202ENST00000339394 ZC2HC1BQ5TFG8 222 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 TEX43Q6ZNM6 134 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 AMELXQ99217 191 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 TM2D2Q9BX73 214 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 VCX2Q9H322 139 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 COX11Q9Y6N1 276 aa14.77□□□□□ -0.04
SDC3-202ENST00000339394 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.77□□□□□ -0.05
SDC3-202ENST00000339394 PAPPA-AS1Q5QFB9 102 aa14.77□□□□□ -0.05
SDC3-202ENST00000339394 LINC00173Q6ZV60 143 aa14.76□□□□□ -0.05
SDC3-202ENST00000339394 IFITM10A6NMD0 228 aa14.75□□□□□ -0.05
SDC3-202ENST00000339394 PSCAO43653 123 aa14.75□□□□□ -0.05
SDC3-202ENST00000339394 KRTAP26-1Q6PEX3 210 aa14.75□□□□□ -0.05
SDC3-202ENST00000339394 CHCHD10Q8WYQ3 142 aaPredicted RBP14.75□□□□□ -0.05
SDC3-202ENST00000339394 ATP5LO75964 103 aa14.74□□□□□ -0.05
SDC3-202ENST00000339394 SS18Q15532 418 aa14.74□□□□□ -0.05
SDC3-202ENST00000339394 MAPKAPK5-AS1Q8N8E1 139 aa14.74□□□□□ -0.05
SDC3-202ENST00000339394 BAALCQ8WXS3 180 aa14.73□□□□□ -0.05
SDC3-202ENST00000339394 C2orf88Q9BSF0 95 aa14.73□□□□□ -0.05
SDC3-202ENST00000339394 CCL25O15444 150 aa14.73□□□□□ -0.05
SDC3-202ENST00000339394 XCL1P47992 114 aa14.73□□□□□ -0.05
SDC3-202ENST00000339394 LEPROTL1O95214 131 aa14.72□□□□□ -0.05
SDC3-202ENST00000339394 GAGE12HA6NDE8 117 aa14.7□□□□□ -0.06
SDC3-202ENST00000339394 PRSS29PA6NIE9 313 aa14.7□□□□□ -0.06
SDC3-202ENST00000339394 UBE2D1P51668 147 aa14.7□□□□□ -0.06
SDC3-202ENST00000339394 CST9LQ9H4G1 147 aa14.7□□□□□ -0.06
SDC3-202ENST00000339394 FABP4P15090 132 aa14.69□□□□□ -0.06
SDC3-202ENST00000339394 TNP2Q05952 138 aa14.69□□□□□ -0.06
SDC3-202ENST00000339394 PMVKQ15126 192 aa14.69□□□□□ -0.06
SDC3-202ENST00000339394 IFI27L1Q96BM0 104 aa14.69□□□□□ -0.06
SDC3-202ENST00000339394 FOXI1Q12951 378 aa14.68□□□□□ -0.06
SDC3-202ENST00000339394 CD164L2Q6UWJ8 174 aa14.68□□□□□ -0.06
SDC3-202ENST00000339394 LINC00242Q5T6M2 205 aa14.68□□□□□ -0.06
SDC3-202ENST00000339394 LINC00336Q6ZUF6 198 aa14.68□□□□□ -0.06
SDC3-202ENST00000339394 PRSS1P07477 247 aa14.67□□□□□ -0.06
SDC3-202ENST00000339394 HSPB8Q9UJY1 196 aa14.67□□□□□ -0.06
SDC3-202ENST00000339394 LRCOL1A6NCL2 159 aa14.66□□□□□ -0.06
SDC3-202ENST00000339394 S100A6P06703 90 aa14.66□□□□□ -0.06
SDC3-202ENST00000339394 LECT2O14960 151 aa14.64□□□□□ -0.07
SDC3-202ENST00000339394 COX6A2Q02221 97 aa14.64□□□□□ -0.07
SDC3-202ENST00000339394 FAM19A3Q7Z5A8 133 aa14.64□□□□□ -0.07
SDC3-202ENST00000339394 DNAH11Q96DT5 4516 aa14.64□□□□□ -0.07
SDC3-202ENST00000339394 A0A087WTM6 91 aa14.64□□□□□ -0.07
SDC3-202ENST00000339394 IGHV3OR16-9A0A0B4J2B5 98 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms