RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 CDIP1Q9H305 208 aa4.07□□□□□ -1.76
PTPRB-202ENST00000334414 MUC22E2RYF6 1773 aaPredicted RBP4.07□□□□□ -1.76
PTPRB-202ENST00000334414 C22orf34Q6ZV56 151 aa4.07□□□□□ -1.76
PTPRB-202ENST00000334414 C1orf137Q5JT78 98 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 Q6ZTI0 123 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 IGHV4-38-2P0DP08 117 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 RNASE3P12724 160 aaKnown RBP4.06□□□□□ -1.76
PTPRB-202ENST00000334414 REG3GQ6UW15 175 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 WFDC13Q8IUB5 93 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 C11orf45Q8TAV5 145 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 DEFB135Q30KP9 77 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 CACNA1DQ01668 2161 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 H0Y9P7 68 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 PSPHP1O15172 72 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 BRI3O95415 125 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 BRWD1-AS2P59051 145 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 EML5Q05BV3 1969 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 SMIM1B2RUZ4 78 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 CYP4F30PQ9H0H9 118 aa4.06□□□□□ -1.76
PTPRB-202ENST00000334414 LOC110117498A0A087WWA1 95 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 URB1O60287 2271 aaKnown RBP4.05□□□□□ -1.76
PTPRB-202ENST00000334414 CRIP1P50238 77 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 SPRNQ5BIV9 151 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 PIP4P1Q86T03 277 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 LINC00959A0A1B0GUT2 108 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 LINC00310P59036 64 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 SEC16AO15027 2179 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 DYSFO75923 2080 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 RETNLBQ9BQ08 111 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 ASCC3Q8N3C0 2202 aaKnown RBP4.05□□□□□ -1.76
PTPRB-202ENST00000334414 TET1Q8NFU7 2136 aa4.05□□□□□ -1.76
PTPRB-202ENST00000334414 Q6ZS46 218 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 Q6ZVQ6 151 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 A0A087WYN8 130 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 ZNF702PQ9H963 129 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 RP1L1Q8IWN7 2480 aaPredicted RBP4.04□□□□□ -1.76
PTPRB-202ENST00000334414 CDC42SE2Q9NRR3 84 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 MAP1BP46821 2468 aaKnown RBP4.04□□□□□ -1.76
PTPRB-202ENST00000334414 C2orf48Q96LS8 159 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 DEFB114Q30KQ6 69 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 MED12LQ86YW9 2145 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 A0A1B0GUV1 79 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 LINC00575Q6W349 94 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 GTF3C1Q12789 2109 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 PRM2P04554 102 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 CD164Q04900 197 aa4.04□□□□□ -1.76
PTPRB-202ENST00000334414 SPAG11AQ6PDA7 123 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 SOSTDC1Q6X4U4 206 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 IGKV2-28A0A075B6P5 120 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 IGKV2D-28P01615 120 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 IGHV4-61A0A0C4DH41 118 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 NANOS2P60321 138 aaKnown RBP4.03□□□□□ -1.76
PTPRB-202ENST00000334414 SBSPONQ8IVN8 264 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 Q6YL49 198 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 ZFP36P26651 326 aaKnown RBP4.03□□□□□ -1.76
PTPRB-202ENST00000334414 CRIP3Q6Q6R5 217 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 DCANP1Q8TF63 244 aa4.03□□□□□ -1.76
PTPRB-202ENST00000334414 ACYP2P14621 99 aa4.03□□□□□ -1.77
PTPRB-202ENST00000334414 CPAMD8Q8IZJ3 1885 aa4.03□□□□□ -1.77
PTPRB-202ENST00000334414 Q6ZPA2 131 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 TRAV10A0A0B4J240 114 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 POM121L12Q8N7R1 296 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 A0A087WVE0 104 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 IGKV2-24A0A0C4DH68 120 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.02□□□□□ -1.77
PTPRB-202ENST00000334414 PI4KAP42356 2102 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 DNAJC9-AS1A6NH13 148 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 SHISA2Q6UWI4 295 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 URB1-AS1Q96HZ7 61 aa4.02□□□□□ -1.77
PTPRB-202ENST00000334414 IGLV1-40P01703 118 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 ARHGAP21Q5T5U3 1957 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 LINC00242Q5T6M2 205 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 ASXL3Q9C0F0 2248 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 C2orf16Q68DN1 1984 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 A0A1B0GU69 56 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 BEAN1Q3B7T3 259 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 HCFC1P51610 2035 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 CRIP2P52943 208 aaPredicted RBP4.01□□□□□ -1.77
PTPRB-202ENST00000334414 ICE1Q9Y2F5 2266 aa4.01□□□□□ -1.77
PTPRB-202ENST00000334414 IGLV2-18A0A075B6J9 118 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 XAGE1AQ9HD64 81 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 IGHV4-30-2A0A087WSY4 118 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 Q6ZTC4 211 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 DEFB131BA0A096LNP1 70 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 Q8N2B8 174 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 C11orf72Q8NBR9 251 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 C1orf64Q8NEQ6 169 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 KPRPQ5T749 579 aaPredicted RBP4□□□□□ -1.77
PTPRB-202ENST00000334414 SDK1Q7Z5N4 2213 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 CYSRT1A8MQ03 144 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 IGLV5-39A0A0G2JS06 123 aa4□□□□□ -1.77
PTPRB-202ENST00000334414 A0A0J9YWU9 116 aa3.99□□□□□ -1.77
PTPRB-202ENST00000334414 PRR4Q16378 134 aa3.99□□□□□ -1.77
PTPRB-202ENST00000334414 J3QKU1 62 aa3.99□□□□□ -1.77
PTPRB-202ENST00000334414 LINC00482Q8N8I6 264 aa3.99□□□□□ -1.77
PTPRB-202ENST00000334414 ADORA2A-AS1P86434 159 aa3.99□□□□□ -1.77
PTPRB-202ENST00000334414 ZNF843Q8N446 348 aa3.99□□□□□ -1.77
PTPRB-202ENST00000334414 LINC00846Q9NV44 126 aa3.99□□□□□ -1.77
PTPRB-202ENST00000334414 IGHV6-1A0A0B4J1U7 121 aa3.98□□□□□ -1.77
PTPRB-202ENST00000334414 TSPEAR-AS2P59090 65 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms