RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 GAGE12JA6NER3 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 LY6G6DO95868 133 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 RPL36AP83881 106 aaKnown RBP10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 GAGE4Q13068 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 GAGE5Q13069 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 GAGE13Q4V321 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 DGAT2L7PQ6IED9 249 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 RPL36ALQ969Q0 106 aaKnown RBP10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 VPS25Q9BRG1 176 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 A0A0J9YXY3 114 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 GAGE7O76087 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 GAGE12FP0CL80 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 GAGE12GP0CL81 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 GAGE12IP0CL82 117 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 DAZ2Q13117 558 aaKnown RBP10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 CSNK1G2-AS1Q8NCQ2 148 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 C16orf74Q96GX8 76 aa10.61□□□□□ -0.71
CLCNKA-201ENST00000331433 IGHV1-58A0A0C4DH39 117 aa10.6□□□□□ -0.71
CLCNKA-201ENST00000331433 NTM-AS1Q6ZSK4 140 aa10.6□□□□□ -0.71
CLCNKA-201ENST00000331433 TRGV2A0A075B6R0 118 aa10.6□□□□□ -0.71
CLCNKA-201ENST00000331433 TRBV10-1A0A0K0K1A3 114 aa10.6□□□□□ -0.71
CLCNKA-201ENST00000331433 RPL24P83731 157 aaKnown RBP10.6□□□□□ -0.71
CLCNKA-201ENST00000331433 WFDC2Q14508 124 aa10.6□□□□□ -0.71
CLCNKA-201ENST00000331433 GEMIN7Q9H840 131 aaKnown RBP10.6□□□□□ -0.71
CLCNKA-201ENST00000331433 LOC107984156A0A0G2JMH3 177 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 A4D1N5 150 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 ARL17AQ8IVW1 177 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 PF4P02776 101 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 UBE2D3P61077 147 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 UBE2D2P62837 147 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 MUSTN1Q8IVN3 82 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 VSIG2Q96IQ7 327 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 CDKN2A-AS1Q9UH64 79 aa10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 NSD1Q96L73 2696 aaPredicted RBP10.59□□□□□ -0.71
CLCNKA-201ENST00000331433 C1QTNF4Q9BXJ3 329 aa10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 NDUFA12Q9UI09 145 aa10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 BAHCC1Q9P281 2608 aa10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 TEX48A0A1B0GUV7 120 aa10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 TMEM238C9JI98 176 aa10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 EIF4EBP3O60516 100 aaPredicted RBP10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 DAZ4Q86SG3 579 aaKnown RBP10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 DAZ3Q9NR90 486 aaKnown RBP10.58□□□□□ -0.72
CLCNKA-201ENST00000331433 LOC100131303A0A0U1RQF7 123 aa10.57□□□□□ -0.72
CLCNKA-201ENST00000331433 F8W1H4 67 aa10.57□□□□□ -0.72
CLCNKA-201ENST00000331433 NBEAL2Q6ZNJ1 2754 aa10.57□□□□□ -0.72
CLCNKA-201ENST00000331433 G3V4G9 280 aa10.57□□□□□ -0.72
CLCNKA-201ENST00000331433 COX6A2Q02221 97 aa10.57□□□□□ -0.72
CLCNKA-201ENST00000331433 LITAFQ99732 161 aa10.57□□□□□ -0.72
CLCNKA-201ENST00000331433 PRO0461Q9UI25 63 aa10.56□□□□□ -0.72
CLCNKA-201ENST00000331433 LINC00482Q8N8I6 264 aa10.56□□□□□ -0.72
CLCNKA-201ENST00000331433 PRO1854Q9UHT4 67 aa10.56□□□□□ -0.72
CLCNKA-201ENST00000331433 TENM1Q9UKZ4 2725 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 INAFM1C9JVW0 142 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 ADAMTSL4-AS1Q5T5F5 129 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 SH2D6Q7Z4S9 175 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 TRAV13-1A0A0B4J241 112 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 PSMB2P49721 201 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 ETDBQ3ZM63 59 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 LINC00242Q5T6M2 205 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 SBSPONQ8IVN8 264 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 SPATA3Q8NHX4 192 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 OVOL2Q9BRP0 275 aa10.55□□□□□ -0.72
CLCNKA-201ENST00000331433 HIVEP1P15822 2718 aa10.54□□□□□ -0.72
CLCNKA-201ENST00000331433 IGLV5-45A0A087WSX0 123 aa10.54□□□□□ -0.72
CLCNKA-201ENST00000331433 TIRAPP58753 221 aa10.54□□□□□ -0.72
CLCNKA-201ENST00000331433 TRGV4A0A0C4DH28 118 aa10.53□□□□□ -0.72
CLCNKA-201ENST00000331433 PRSS2P07478 247 aa10.53□□□□□ -0.72
CLCNKA-201ENST00000331433 PCP4P48539 62 aa10.53□□□□□ -0.72
CLCNKA-201ENST00000331433 TMEM101Q96IK0 257 aa10.53□□□□□ -0.72
CLCNKA-201ENST00000331433 H7C2G1 150 aa10.53□□□□□ -0.72
CLCNKA-201ENST00000331433 ZFAND6Q6FIF0 208 aa10.53□□□□□ -0.72
CLCNKA-201ENST00000331433 NPC2P61916 151 aa10.52□□□□□ -0.72
CLCNKA-201ENST00000331433 C21orf62-AS1Q17RA5 79 aa10.52□□□□□ -0.72
CLCNKA-201ENST00000331433 CSDC2Q9Y534 153 aaKnown RBP10.52□□□□□ -0.73
CLCNKA-201ENST00000331433 TRBV6-4A0A1B0GX49 114 aa10.51□□□□□ -0.73
CLCNKA-201ENST00000331433 CDC42SE2Q9NRR3 84 aa10.51□□□□□ -0.73
CLCNKA-201ENST00000331433 CRLF1O75462 422 aa10.51□□□□□ -0.73
CLCNKA-201ENST00000331433 TCL1BO95988 128 aa10.51□□□□□ -0.73
CLCNKA-201ENST00000331433 IGHV3-33P01772 117 aa10.51□□□□□ -0.73
CLCNKA-201ENST00000331433 HERVK_113P63121 156 aa10.51□□□□□ -0.73
CLCNKA-201ENST00000331433 TMEM243Q9BU79 118 aa10.51□□□□□ -0.73
CLCNKA-201ENST00000331433 A0A0B4J2C4 111 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 UBE2L6O14933 153 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 DEFB130BP0DP73 79 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 DEFB130AP0DP74 79 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 FHL2Q14192 279 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 SCGB1C2P0DMR2 95 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 SMCPP49901 116 aaPredicted RBP10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 DAND5Q8N907 189 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 GTSF1LQ9H1H1 148 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 ATRQ13535 2644 aa10.5□□□□□ -0.73
CLCNKA-201ENST00000331433 LYRM7Q5U5X0 104 aa10.49□□□□□ -0.73
CLCNKA-201ENST00000331433 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.49□□□□□ -0.73
CLCNKA-201ENST00000331433 MIAQ16674 131 aa10.49□□□□□ -0.73
CLCNKA-201ENST00000331433 SPANXDQ9BXN6 97 aa10.49□□□□□ -0.73
CLCNKA-201ENST00000331433 SPANXCQ9NY87 97 aa10.49□□□□□ -0.73
CLCNKA-201ENST00000331433 ERG28Q9UKR5 140 aa10.49□□□□□ -0.73
CLCNKA-201ENST00000331433 TRRAPQ9Y4A5 3859 aa10.48□□□□□ -0.73
CLCNKA-201ENST00000331433 IGLV5-39A0A0G2JS06 123 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms