RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 KIR2DL5BQ8NHK3 375 aa9.85□□□□□ -0.83
CCDC88C-201ENST00000331194 hADV29S1A0JD25 119 aa9.84□□□□□ -0.83
CCDC88C-201ENST00000331194 LINC00526Q96FQ7 95 aa9.84□□□□□ -0.83
CCDC88C-201ENST00000331194 IGHV3-38A0A0C4DH36 116 aa9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 DCANP1Q8TF63 244 aa9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 HELZ2Q9BYK8 2649 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 ABCA2Q9BZC7 2435 aa9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 FAM223BA6NKX1 122 aa9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 DAZ2Q13117 558 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 DAZ4Q86SG3 579 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 FAM223AQ8IWN6 122 aa9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 DAZ1Q9NQZ3 744 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 DAZ3Q9NR90 486 aaKnown RBP9.83□□□□□ -0.84
CCDC88C-201ENST00000331194 CYSTM1Q9H1C7 97 aa9.82□□□□□ -0.84
CCDC88C-201ENST00000331194 CDKN2A-AS1Q9UH64 79 aa9.82□□□□□ -0.84
CCDC88C-201ENST00000331194 A0A1B0GX51 115 aa9.82□□□□□ -0.84
CCDC88C-201ENST00000331194 C19orf54Q5BKX5 351 aa9.82□□□□□ -0.84
CCDC88C-201ENST00000331194 BLCAPP62952 87 aa9.82□□□□□ -0.84
CCDC88C-201ENST00000331194 C11orf71Q6IPW1 123 aa9.82□□□□□ -0.84
CCDC88C-201ENST00000331194 ZNF469Q96JG9 3925 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-201ENST00000331194 ANKRD17O75179 2603 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-201ENST00000331194 FASNP49327 2511 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-201ENST00000331194 Q6ZSN1 163 aa9.81□□□□□ -0.84
CCDC88C-201ENST00000331194 DSCR8Q96T75 97 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 PRORYQ9H606 182 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 TENM4Q6N022 2769 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 IGHV1OR15-1A0A075B7D0 117 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 COX6A2Q02221 97 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 FAM218AQ96MZ4 157 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 Q9HAA7 133 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 MOB4Q9Y3A3 225 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 C22orf24Q9Y442 160 aa9.8□□□□□ -0.84
CCDC88C-201ENST00000331194 HOXD3P31249 432 aaPredicted RBP9.79□□□□□ -0.84
CCDC88C-201ENST00000331194 SOSTDC1Q6X4U4 206 aa9.79□□□□□ -0.84
CCDC88C-201ENST00000331194 BAALC-AS2P0C853 105 aa9.79□□□□□ -0.84
CCDC88C-201ENST00000331194 BPESC1Q9GZL8 116 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 TIRAPP58753 221 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 LINC00643Q86TS7 51 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 LINC00308Q8TCZ7 52 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 LINC00467Q9BRT7 94 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 Q9H8V8 135 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 HECTD1Q9ULT8 2610 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 ACANP16112 2415 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 COX7CP15954 63 aa9.78□□□□□ -0.84
CCDC88C-201ENST00000331194 OXTP01178 125 aa9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 RBMY1A1P0DJD3 496 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 RBMY1CP0DJD4 496 aa9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 RBMY1FQ15415 496 aaKnown RBP9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 PYGO1Q9Y3Y4 419 aa9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 TINCRA0A1B0GVN0 87 aa9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 CHCHD7Q9BUK0 85 aa9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 UBE2D4Q9Y2X8 147 aa9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 TEX15Q9BXT5 2789 aa9.77□□□□□ -0.85
CCDC88C-201ENST00000331194 TRAV13-1A0A0B4J241 112 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 COX7A2LO14548 114 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 C10orf99Q6UWK7 81 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 RNF152Q8N8N0 203 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 BBC3Q96PG8 261 aaPredicted RBP9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 IMUPQ9GZP8 106 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 SYNJ2BPP57105 145 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 C9orf129Q5T035 196 aaKnown RBP9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 SDIM1Q6ZPB5 146 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 LMO4P61968 165 aa9.76□□□□□ -0.85
CCDC88C-201ENST00000331194 MXRA5Q9NR99 2828 aa9.75□□□□□ -0.85
CCDC88C-201ENST00000331194 ITPR2Q14571 2701 aa9.75□□□□□ -0.85
CCDC88C-201ENST00000331194 TRACP01848 142 aa9.75□□□□□ -0.85
CCDC88C-201ENST00000331194 C2orf48Q96LS8 159 aa9.75□□□□□ -0.85
CCDC88C-201ENST00000331194 MYO9AB2RTY4 2548 aa9.75□□□□□ -0.85
CCDC88C-201ENST00000331194 NF1P21359 2839 aa9.75□□□□□ -0.85
CCDC88C-201ENST00000331194 ACYP1P07311 99 aa9.75□□□□□ -0.85
CCDC88C-201ENST00000331194 RPS28P62857 69 aaKnown RBP9.74□□□□□ -0.85
CCDC88C-201ENST00000331194 BEAN1Q3B7T3 259 aa9.74□□□□□ -0.85
CCDC88C-201ENST00000331194 PIK3CD-AS1Q5SR53 167 aa9.74□□□□□ -0.85
CCDC88C-201ENST00000331194 DPH3Q96FX2 82 aa9.74□□□□□ -0.85
CCDC88C-201ENST00000331194 MTORP42345 2549 aa9.73□□□□□ -0.85
CCDC88C-201ENST00000331194 IGKV3D-7A0A0C4DH55 119 aa9.73□□□□□ -0.85
CCDC88C-201ENST00000331194 H3BUX3 64 aa9.73□□□□□ -0.85
CCDC88C-201ENST00000331194 C5orf38Q86SI9 138 aa9.73□□□□□ -0.85
CCDC88C-201ENST00000331194 USMG5Q96IX5 58 aa9.73□□□□□ -0.85
CCDC88C-201ENST00000331194 A0A087WVE0 104 aa9.72□□□□□ -0.85
CCDC88C-201ENST00000331194 NDUFA1O15239 70 aa9.72□□□□□ -0.85
CCDC88C-201ENST00000331194 IGHV4-38-2P0DP08 117 aa9.72□□□□□ -0.85
CCDC88C-201ENST00000331194 APCP25054 2843 aa9.72□□□□□ -0.85
CCDC88C-201ENST00000331194 CRYGAP11844 174 aa9.72□□□□□ -0.85
CCDC88C-201ENST00000331194 CIRBPQ14011 172 aaKnown RBP9.71□□□□□ -0.85
CCDC88C-201ENST00000331194 UBR5O95071 2799 aaPredicted RBP9.71□□□□□ -0.86
CCDC88C-201ENST00000331194 Q5XG85 94 aa9.7□□□□□ -0.86
CCDC88C-201ENST00000331194 IGHV3OR16-12A0A075B7B8 117 aa9.7□□□□□ -0.86
CCDC88C-201ENST00000331194 TIMM17BO60830 172 aa9.7□□□□□ -0.86
CCDC88C-201ENST00000331194 PEMTQ9UBM1 199 aa9.7□□□□□ -0.86
CCDC88C-201ENST00000331194 SNRPD3P62318 126 aaKnown RBP9.69□□□□□ -0.86
CCDC88C-201ENST00000331194 DGAT2L7PQ6IED9 249 aa9.69□□□□□ -0.86
CCDC88C-201ENST00000331194 FBXL19-AS1Q494R0 122 aa9.69□□□□□ -0.86
CCDC88C-201ENST00000331194 C10orf105Q8TEF2 133 aa9.69□□□□□ -0.86
CCDC88C-201ENST00000331194 PIMREGQ9BSJ6 248 aa9.69□□□□□ -0.86
CCDC88C-201ENST00000331194 C14orf132Q9NPU4 83 aa9.69□□□□□ -0.86
CCDC88C-201ENST00000331194 PRIMA1Q86XR5 153 aa9.69□□□□□ -0.86
CCDC88C-201ENST00000331194 LINC00242Q5T6M2 205 aa9.68□□□□□ -0.86
CCDC88C-201ENST00000331194 MAPK1IP1LQ8NDC0 245 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms