RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 LITAFQ99732 161 aa11.63□□□□□ -0.55
USHBP1-202ENST00000324554 CHCHD7Q9BUK0 85 aa11.63□□□□□ -0.55
USHBP1-202ENST00000324554 CRYBA4P53673 196 aa11.62□□□□□ -0.55
USHBP1-202ENST00000324554 LINC01006Q8NI28 216 aa11.62□□□□□ -0.55
USHBP1-202ENST00000324554 ANKRD29Q8N6D5 301 aa11.62□□□□□ -0.55
USHBP1-202ENST00000324554 ERG28Q9UKR5 140 aa11.62□□□□□ -0.55
USHBP1-202ENST00000324554 A8MZ25 164 aa11.61□□□□□ -0.55
USHBP1-202ENST00000324554 INAFM1C9JVW0 142 aa11.61□□□□□ -0.55
USHBP1-202ENST00000324554 BEAN1Q3B7T3 259 aa11.61□□□□□ -0.55
USHBP1-202ENST00000324554 ODF3L2Q3SX64 289 aa11.61□□□□□ -0.55
USHBP1-202ENST00000324554 FN1P02751 2386 aaKnown RBP11.61□□□□□ -0.55
USHBP1-202ENST00000324554 IGHV3-53P01767 116 aa11.61□□□□□ -0.55
USHBP1-202ENST00000324554 CITED2Q99967 270 aaPredicted RBP11.61□□□□□ -0.55
USHBP1-202ENST00000324554 UBE2D4Q9Y2X8 147 aa11.61□□□□□ -0.55
USHBP1-202ENST00000324554 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.6□□□□□ -0.55
USHBP1-202ENST00000324554 IGKV2-29A2NJV5 120 aaPredicted RBP11.6□□□□□ -0.55
USHBP1-202ENST00000324554 ADAMTSL4-AS1Q5T5F5 129 aa11.6□□□□□ -0.55
USHBP1-202ENST00000324554 RNASE1P07998 156 aaKnown RBP11.6□□□□□ -0.55
USHBP1-202ENST00000324554 XCL2Q9UBD3 114 aa11.6□□□□□ -0.55
USHBP1-202ENST00000324554 IGHV3-38A0A0C4DH36 116 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 IGHV1-58A0A0C4DH39 117 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 C9JAW5 83 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 SPANXA1Q9NS26 97 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 RS1O15537 224 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 SLC25A20O43772 301 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 DNAJC30Q96LL9 226 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 CLUHP3Q96NS8 147 aa11.59□□□□□ -0.55
USHBP1-202ENST00000324554 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.58□□□□□ -0.56
USHBP1-202ENST00000324554 MT-ATP8P03928 68 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 SPINK8P0C7L1 97 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 XGP55808 180 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 HILS1P60008 231 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 Q6ZUT4 128 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 NDUFA12Q9UI09 145 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 Q1RN00 199 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 VSIG2Q96IQ7 327 aa11.58□□□□□ -0.56
USHBP1-202ENST00000324554 NSD1Q96L73 2696 aaPredicted RBP11.58□□□□□ -0.56
USHBP1-202ENST00000324554 TINCRA0A1B0GVN0 87 aa11.57□□□□□ -0.56
USHBP1-202ENST00000324554 PRSS2P07478 247 aa11.57□□□□□ -0.56
USHBP1-202ENST00000324554 TRAV25A0A0B4J276 109 aa11.57□□□□□ -0.56
USHBP1-202ENST00000324554 STHQ8IWL8 128 aa11.57□□□□□ -0.56
USHBP1-202ENST00000324554 C1orf158Q8N1D5 194 aa11.56□□□□□ -0.56
USHBP1-202ENST00000324554 IGHV3OR16-12A0A075B7B8 117 aa11.55□□□□□ -0.56
USHBP1-202ENST00000324554 CCL24O00175 119 aa11.55□□□□□ -0.56
USHBP1-202ENST00000324554 TRIAP1O43715 76 aa11.55□□□□□ -0.56
USHBP1-202ENST00000324554 NPC2P61916 151 aa11.55□□□□□ -0.56
USHBP1-202ENST00000324554 IL17DQ8TAD2 202 aa11.55□□□□□ -0.56
USHBP1-202ENST00000324554 SPANXDQ9BXN6 97 aa11.55□□□□□ -0.56
USHBP1-202ENST00000324554 SPANXCQ9NY87 97 aa11.55□□□□□ -0.56
USHBP1-202ENST00000324554 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.54□□□□□ -0.56
USHBP1-202ENST00000324554 TRBV30A0A0K0K1B3 111 aa11.53□□□□□ -0.56
USHBP1-202ENST00000324554 A0A1B0GV72 72 aa11.53□□□□□ -0.56
USHBP1-202ENST00000324554 CIDEAO60543 219 aa11.53□□□□□ -0.56
USHBP1-202ENST00000324554 MIAQ16674 131 aa11.53□□□□□ -0.56
USHBP1-202ENST00000324554 LINC01620Q4KN68 170 aa11.53□□□□□ -0.56
USHBP1-202ENST00000324554 CDKN2A-AS1Q9UH64 79 aa11.53□□□□□ -0.56
USHBP1-202ENST00000324554 M0QXV9 152 aa11.52□□□□□ -0.56
USHBP1-202ENST00000324554 ATXN8Q156A1 80 aa11.52□□□□□ -0.56
USHBP1-202ENST00000324554 C2CD3Q4AC94 2353 aa11.52□□□□□ -0.56
USHBP1-202ENST00000324554 TRGV1A0A0A0MS02 117 aa11.52□□□□□ -0.57
USHBP1-202ENST00000324554 CKS1BP61024 79 aa11.52□□□□□ -0.57
USHBP1-202ENST00000324554 ZFAND6Q6FIF0 208 aa11.52□□□□□ -0.57
USHBP1-202ENST00000324554 GEMIN7Q9H840 131 aaKnown RBP11.52□□□□□ -0.57
USHBP1-202ENST00000324554 C16orf95Q9H693 158 aa11.51□□□□□ -0.57
USHBP1-202ENST00000324554 JMJD1CQ15652 2540 aa11.51□□□□□ -0.57
USHBP1-202ENST00000324554 DAND5Q8N907 189 aa11.5□□□□□ -0.57
USHBP1-202ENST00000324554 COX6A2Q02221 97 aa11.5□□□□□ -0.57
USHBP1-202ENST00000324554 NTN5Q8WTR8 489 aaPredicted RBP11.5□□□□□ -0.57
USHBP1-202ENST00000324554 ICOSQ9Y6W8 199 aa11.5□□□□□ -0.57
USHBP1-202ENST00000324554 KRTAP10-3P60369 221 aa11.49□□□□□ -0.57
USHBP1-202ENST00000324554 Q6ZTI0 123 aa11.49□□□□□ -0.57
USHBP1-202ENST00000324554 TMEM101Q96IK0 257 aa11.49□□□□□ -0.57
USHBP1-202ENST00000324554 IGLV5-45A0A087WSX0 123 aa11.48□□□□□ -0.57
USHBP1-202ENST00000324554 DGAT2L7PQ6IED9 249 aa11.48□□□□□ -0.57
USHBP1-202ENST00000324554 TIRAPP58753 221 aa11.48□□□□□ -0.57
USHBP1-202ENST00000324554 F8P00451 2351 aa11.48□□□□□ -0.57
USHBP1-202ENST00000324554 TENM1Q9UKZ4 2725 aa11.48□□□□□ -0.57
USHBP1-202ENST00000324554 TEX49A0A1B0GTD5 131 aa11.47□□□□□ -0.57
USHBP1-202ENST00000324554 K7EQD1 137 aa11.47□□□□□ -0.57
USHBP1-202ENST00000324554 LINC00694P0DN24 101 aa11.47□□□□□ -0.57
USHBP1-202ENST00000324554 TRBV10-2A0A0K0K1G8 114 aa11.47□□□□□ -0.57
USHBP1-202ENST00000324554 NDUFA7O95182 113 aa11.47□□□□□ -0.57
USHBP1-202ENST00000324554 TRBV10-1A0A0K0K1A3 114 aa11.46□□□□□ -0.57
USHBP1-202ENST00000324554 TMEM262E9PQX1 116 aa11.46□□□□□ -0.57
USHBP1-202ENST00000324554 RPL36AP83881 106 aaKnown RBP11.46□□□□□ -0.57
USHBP1-202ENST00000324554 RPL36ALQ969Q0 106 aaKnown RBP11.46□□□□□ -0.57
USHBP1-202ENST00000324554 LINC01600Q96MT4 127 aa11.46□□□□□ -0.57
USHBP1-202ENST00000324554 NDUFA1O15239 70 aa11.46□□□□□ -0.58
USHBP1-202ENST00000324554 GIG44P09565 113 aaPredicted RBP11.46□□□□□ -0.58
USHBP1-202ENST00000324554 CLEC2BQ92478 149 aa11.46□□□□□ -0.58
USHBP1-202ENST00000324554 TRAV4A0A0B4J268 109 aa11.45□□□□□ -0.58
USHBP1-202ENST00000324554 TIMM17BO60830 172 aa11.45□□□□□ -0.58
USHBP1-202ENST00000324554 LINC00242Q5T6M2 205 aa11.45□□□□□ -0.58
USHBP1-202ENST00000324554 NTM-AS1Q6ZSK4 140 aa11.45□□□□□ -0.58
USHBP1-202ENST00000324554 VWFP04275 2813 aa11.45□□□□□ -0.58
USHBP1-202ENST00000324554 H7C423 109 aa11.45□□□□□ -0.58
USHBP1-202ENST00000324554 RNF183Q96D59 192 aa11.45□□□□□ -0.58
USHBP1-202ENST00000324554 NOP10Q9NPE3 64 aaKnown RBP11.45□□□□□ -0.58
USHBP1-202ENST00000324554 DAZ2Q13117 558 aaKnown RBP11.44□□□□□ -0.58
USHBP1-202ENST00000324554 DAZ4Q86SG3 579 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms