RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 TRIAP1O43715 76 aa7.71□□□□□ -1.17
COL3A1-202ENST00000317840 Q6ZSV7 163 aa7.71□□□□□ -1.17
COL3A1-202ENST00000317840 DNAJC9-AS1A6NH13 148 aa7.71□□□□□ -1.18
COL3A1-202ENST00000317840 GCN1Q92616 2671 aaKnown RBP7.71□□□□□ -1.18
COL3A1-202ENST00000317840 BRI3O95415 125 aa7.71□□□□□ -1.18
COL3A1-202ENST00000317840 ICOSQ9Y6W8 199 aa7.71□□□□□ -1.18
COL3A1-202ENST00000317840 PLA2G2AP14555 144 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 CITED2Q99967 270 aaPredicted RBP7.7□□□□□ -1.18
COL3A1-202ENST00000317840 LINC00467Q9BRT7 94 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 INSP01308 110 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 TOMM7Q9P0U1 55 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 CDKN2A-AS1Q9UH64 79 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 CFHR3Q02985 330 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 FHL3Q13643 280 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 PRIMA1Q86XR5 153 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 RNF183Q96D59 192 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 AMELXQ99217 191 aa7.7□□□□□ -1.18
COL3A1-202ENST00000317840 Q9H8V8 135 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 SPANXA1Q9NS26 97 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 CCL24O00175 119 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 UBE2L6O14933 153 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 RBMY1A1P0DJD3 496 aaKnown RBP7.69□□□□□ -1.18
COL3A1-202ENST00000317840 RBMY1CP0DJD4 496 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 RBMY1FQ15415 496 aaKnown RBP7.69□□□□□ -1.18
COL3A1-202ENST00000317840 ADAMTSL4-AS1Q5T5F5 129 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 VSIG2Q96IQ7 327 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 CLUHP3Q96NS8 147 aa7.69□□□□□ -1.18
COL3A1-202ENST00000317840 C15orf53Q8NAA6 179 aa7.68□□□□□ -1.18
COL3A1-202ENST00000317840 TRBV10-2A0A0K0K1G8 114 aa7.68□□□□□ -1.18
COL3A1-202ENST00000317840 Q6ZSN1 163 aa7.68□□□□□ -1.18
COL3A1-202ENST00000317840 GAGE12JA6NER3 117 aa7.68□□□□□ -1.18
COL3A1-202ENST00000317840 MRPS36P82909 103 aaKnown RBP7.68□□□□□ -1.18
COL3A1-202ENST00000317840 RPL36AP83881 106 aaKnown RBP7.68□□□□□ -1.18
COL3A1-202ENST00000317840 GAGE4Q13068 117 aa7.68□□□□□ -1.18
COL3A1-202ENST00000317840 GAGE5Q13069 117 aa7.68□□□□□ -1.18
COL3A1-202ENST00000317840 RPL36ALQ969Q0 106 aaKnown RBP7.68□□□□□ -1.18
COL3A1-202ENST00000317840 ZNF702PQ9H963 129 aa7.68□□□□□ -1.18
COL3A1-202ENST00000317840 MIAQ16674 131 aa7.67□□□□□ -1.18
COL3A1-202ENST00000317840 PYGO1Q9Y3Y4 419 aa7.67□□□□□ -1.18
COL3A1-202ENST00000317840 TRGV2A0A075B6R0 118 aa7.67□□□□□ -1.18
COL3A1-202ENST00000317840 UNC79Q9P2D8 2635 aa7.67□□□□□ -1.18
COL3A1-202ENST00000317840 B5MCH6 92 aa7.66□□□□□ -1.18
COL3A1-202ENST00000317840 TINCRA0A1B0GVN0 87 aa7.66□□□□□ -1.18
COL3A1-202ENST00000317840 TMEM89A2RUT3 159 aa7.66□□□□□ -1.18
COL3A1-202ENST00000317840 UBE2D4Q9Y2X8 147 aa7.66□□□□□ -1.18
COL3A1-202ENST00000317840 TRAV4A0A0B4J268 109 aa7.66□□□□□ -1.18
COL3A1-202ENST00000317840 TRBV30A0A0K0K1B3 111 aa7.66□□□□□ -1.18
COL3A1-202ENST00000317840 CUBNO60494 3623 aa7.66□□□□□ -1.18
COL3A1-202ENST00000317840 MAP6D1Q9H9H5 199 aa7.65□□□□□ -1.18
COL3A1-202ENST00000317840 INAFM1C9JVW0 142 aa7.65□□□□□ -1.19
COL3A1-202ENST00000317840 HTN3P15516 51 aa7.65□□□□□ -1.19
COL3A1-202ENST00000317840 TMEM101Q96IK0 257 aa7.64□□□□□ -1.19
COL3A1-202ENST00000317840 SS18L2Q9UHA2 77 aa7.64□□□□□ -1.19
COL3A1-202ENST00000317840 NDUFA7O95182 113 aa7.64□□□□□ -1.19
COL3A1-202ENST00000317840 HERVK_113P63121 156 aa7.64□□□□□ -1.19
COL3A1-202ENST00000317840 LRRC75A-AS1Q8N1F1 130 aa7.64□□□□□ -1.19
COL3A1-202ENST00000317840 EIF4EBP3O60516 100 aaPredicted RBP7.64□□□□□ -1.19
COL3A1-202ENST00000317840 IFITM1P13164 125 aa7.64□□□□□ -1.19
COL3A1-202ENST00000317840 CHCHD7Q9BUK0 85 aa7.64□□□□□ -1.19
COL3A1-202ENST00000317840 RBMY1BA6NDE4 496 aaKnown RBP7.63□□□□□ -1.19
COL3A1-202ENST00000317840 RBMY1EA6NEQ0 496 aaKnown RBP7.63□□□□□ -1.19
COL3A1-202ENST00000317840 RBMY1DP0C7P1 496 aaKnown RBP7.63□□□□□ -1.19
COL3A1-202ENST00000317840 COPS9Q8WXC6 57 aa7.63□□□□□ -1.19
COL3A1-202ENST00000317840 NF1P21359 2839 aa7.63□□□□□ -1.19
COL3A1-202ENST00000317840 DEFB130BP0DP73 79 aa7.63□□□□□ -1.19
COL3A1-202ENST00000317840 DEFB130AP0DP74 79 aa7.63□□□□□ -1.19
COL3A1-202ENST00000317840 H7C423 109 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 CRLF1O75462 422 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 SBSPONQ8IVN8 264 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 NOP10Q9NPE3 64 aaKnown RBP7.62□□□□□ -1.19
COL3A1-202ENST00000317840 DNAJC30Q96LL9 226 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 GAGE7O76087 117 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 GAGE12FP0CL80 117 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 GAGE12GP0CL81 117 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 GAGE12IP0CL82 117 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 GAGE6Q13070 117 aa7.62□□□□□ -1.19
COL3A1-202ENST00000317840 H3BT86 120 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 Q6ZTI0 123 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 SPANXDQ9BXN6 97 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 SPANXCQ9NY87 97 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 TRGV4A0A0C4DH28 118 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 LINC00158P58513 81 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 OR13C6PQ8NH95 151 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 WFDC10AQ9H1F0 79 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 DNAL4O96015 105 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 COX6A2Q02221 97 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 CHCHD5Q9BSY4 110 aa7.61□□□□□ -1.19
COL3A1-202ENST00000317840 LY6G6DO95868 133 aa7.6□□□□□ -1.19
COL3A1-202ENST00000317840 DEFB114Q30KQ6 69 aa7.6□□□□□ -1.19
COL3A1-202ENST00000317840 LINC00308Q8TCZ7 52 aa7.6□□□□□ -1.19
COL3A1-202ENST00000317840 C11orf68Q9H3H3 251 aaKnown RBP7.6□□□□□ -1.19
COL3A1-202ENST00000317840 NDUFV3P56181 108 aaKnown RBP7.6□□□□□ -1.19
COL3A1-202ENST00000317840 LINC01006Q8NI28 216 aa7.6□□□□□ -1.19
COL3A1-202ENST00000317840 LINC00694P0DN24 101 aa7.6□□□□□ -1.19
COL3A1-202ENST00000317840 APCP25054 2843 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 LITAFQ99732 161 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 LST1O00453 97 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 CRPP02741 224 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 ESM1Q9NQ30 184 aa7.59□□□□□ -1.19
COL3A1-202ENST00000317840 NDUFA1O15239 70 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms