RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ORMDL2Q53FV1 153 aa12.5□□□□□ -0.41
HMGA1-201ENST00000311487 UBE2DNLQ8IWF7 75 aa12.5□□□□□ -0.41
HMGA1-201ENST00000311487 HNRNPA3P51991 378 aaKnown RBP12.5□□□□□ -0.41
HMGA1-201ENST00000311487 PTTG1IPP53801 180 aa12.5□□□□□ -0.41
HMGA1-201ENST00000311487 RPL32P62910 135 aaKnown RBP12.5□□□□□ -0.41
HMGA1-201ENST00000311487 GTSF1LQ9H1H1 148 aa12.5□□□□□ -0.41
HMGA1-201ENST00000311487 ATP5LO75964 103 aa12.49□□□□□ -0.41
HMGA1-201ENST00000311487 DNAJC30Q96LL9 226 aa12.49□□□□□ -0.41
HMGA1-201ENST00000311487 CCL18P55774 89 aa12.49□□□□□ -0.41
HMGA1-201ENST00000311487 NTM-AS1Q6ZSK4 140 aa12.49□□□□□ -0.41
HMGA1-201ENST00000311487 POLR2KP53803 58 aaKnown RBP12.48□□□□□ -0.41
HMGA1-201ENST00000311487 ODF1Q14990 250 aa12.48□□□□□ -0.41
HMGA1-201ENST00000311487 TRBV6-5A0A0K0K1A5 114 aa12.47□□□□□ -0.41
HMGA1-201ENST00000311487 Q8N3U1 123 aa12.47□□□□□ -0.41
HMGA1-201ENST00000311487 TOMM6Q96B49 74 aa12.47□□□□□ -0.41
HMGA1-201ENST00000311487 TP73-AS1Q9UF72 201 aa12.47□□□□□ -0.41
HMGA1-201ENST00000311487 KMT2AQ03164 3969 aa12.47□□□□□ -0.41
HMGA1-201ENST00000311487 PRSS1P07477 247 aa12.47□□□□□ -0.41
HMGA1-201ENST00000311487 WFDC10BQ8IUB3 73 aa12.47□□□□□ -0.41
HMGA1-201ENST00000311487 TCTAP57738 103 aa12.46□□□□□ -0.42
HMGA1-201ENST00000311487 UBE2V1Q13404 147 aa12.46□□□□□ -0.42
HMGA1-201ENST00000311487 DAZ4Q86SG3 579 aaKnown RBP12.46□□□□□ -0.42
HMGA1-201ENST00000311487 DAZ3Q9NR90 486 aaKnown RBP12.46□□□□□ -0.42
HMGA1-201ENST00000311487 CCL25O15444 150 aa12.45□□□□□ -0.42
HMGA1-201ENST00000311487 MRPS16Q9Y3D3 137 aaKnown RBP12.45□□□□□ -0.42
HMGA1-201ENST00000311487 DNAH1Q9P2D7 4330 aa12.44□□□□□ -0.42
HMGA1-201ENST00000311487 I3L3M4 83 aa12.44□□□□□ -0.42
HMGA1-201ENST00000311487 VCYO14598 125 aa12.44□□□□□ -0.42
HMGA1-201ENST00000311487 SLC25A34Q6PIV7 304 aa12.44□□□□□ -0.42
HMGA1-201ENST00000311487 C2orf66Q6UXQ4 117 aa12.44□□□□□ -0.42
HMGA1-201ENST00000311487 SH2D6Q7Z4S9 175 aa12.44□□□□□ -0.42
HMGA1-201ENST00000311487 TRBV6-8A0A0A6YYG3 113 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.43□□□□□ -0.42
HMGA1-201ENST00000311487 BATFQ16520 125 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 STPG4Q8N801 248 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 LINC00476Q8WZB0 136 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 TRBV27A0A0K0K1C4 114 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 TMEM238C9JI98 176 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 TSHBP01222 138 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 SCGB3A1Q96QR1 104 aa12.43□□□□□ -0.42
HMGA1-201ENST00000311487 KMT2CQ8NEZ4 4911 aaKnown RBP12.42□□□□□ -0.42
HMGA1-201ENST00000311487 COX8AP10176 69 aa12.42□□□□□ -0.42
HMGA1-201ENST00000311487 CHCHD5Q9BSY4 110 aa12.42□□□□□ -0.42
HMGA1-201ENST00000311487 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-201ENST00000311487 IGKV2-29A2NJV5 120 aaPredicted RBP12.41□□□□□ -0.42
HMGA1-201ENST00000311487 RNF151Q2KHN1 245 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 LELP1Q5T871 98 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 KIR2DL4Q99706 377 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 A0A087WX48 190 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 TMEM262E9PQX1 116 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 M0R2N4 97 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 IGHV3-30P01768 117 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 IGHV3-33P01772 117 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 IGKCP01834 107 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 IGHV3-30-3P0DP02 117 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 IGHV3-30-5P0DP03 117 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 GAGE6Q13070 117 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 VPS25Q9BRG1 176 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 Q9H8V8 135 aa12.41□□□□□ -0.42
HMGA1-201ENST00000311487 HYDINQ4G0P3 5121 aa12.4□□□□□ -0.42
HMGA1-201ENST00000311487 TRAV12-1A0A0B4J245 112 aa12.4□□□□□ -0.42
HMGA1-201ENST00000311487 DPM2O94777 84 aa12.4□□□□□ -0.42
HMGA1-201ENST00000311487 MRPL35Q9NZE8 188 aaKnown RBP12.4□□□□□ -0.42
HMGA1-201ENST00000311487 CYSLTR1Q9Y271 337 aa12.39□□□□□ -0.43
HMGA1-201ENST00000311487 TRBV25-1A0A075B6N4 114 aa12.39□□□□□ -0.43
HMGA1-201ENST00000311487 TRAV8-6A0A0B4J262 113 aa12.39□□□□□ -0.43
HMGA1-201ENST00000311487 FGF6P10767 208 aa12.39□□□□□ -0.43
HMGA1-201ENST00000311487 ERASQ7Z444 233 aa12.39□□□□□ -0.43
HMGA1-201ENST00000311487 BAALCQ8WXS3 180 aa12.38□□□□□ -0.43
HMGA1-201ENST00000311487 CHCHD7Q9BUK0 85 aa12.38□□□□□ -0.43
HMGA1-201ENST00000311487 COX11Q9Y6N1 276 aa12.38□□□□□ -0.43
HMGA1-201ENST00000311487 VPS13DQ5THJ4 4388 aa12.38□□□□□ -0.43
HMGA1-201ENST00000311487 SIVA1O15304 175 aa12.37□□□□□ -0.43
HMGA1-201ENST00000311487 LINC01549A6NIU2 74 aa12.37□□□□□ -0.43
HMGA1-201ENST00000311487 HINT1P49773 126 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-201ENST00000311487 RPL39P62891 51 aaKnown RBP12.36□□□□□ -0.43
HMGA1-201ENST00000311487 MPV17L2Q567V2 206 aa12.36□□□□□ -0.43
HMGA1-201ENST00000311487 C2orf91Q6ZV80 131 aa12.36□□□□□ -0.43
HMGA1-201ENST00000311487 TMEM243Q9BU79 118 aa12.36□□□□□ -0.43
HMGA1-201ENST00000311487 IGIPA6NJ69 53 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 F8VRH5 84 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 TIRAPP58753 221 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 BOD1L2Q8IYS8 172 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 ALMS1Q8TCU4 4167 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 UBE2L6O14933 153 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 ZC2HC1BQ5TFG8 222 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 UPK3BQ9BT76 320 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 KRTAP1-5Q9BYS1 174 aa12.35□□□□□ -0.43
HMGA1-201ENST00000311487 PLNP26678 52 aa12.34□□□□□ -0.43
HMGA1-201ENST00000311487 NMUP48645 174 aa12.34□□□□□ -0.43
HMGA1-201ENST00000311487 IGKV2D-26A0A0A0MRZ7 120 aa12.33□□□□□ -0.44
HMGA1-201ENST00000311487 LCE6AA0A183 80 aa12.33□□□□□ -0.44
HMGA1-201ENST00000311487 TIMM17AQ99595 171 aa12.33□□□□□ -0.44
HMGA1-201ENST00000311487 PRSS29PA6NIE9 313 aa12.33□□□□□ -0.44
HMGA1-201ENST00000311487 PCP2Q8IVA1 136 aa12.33□□□□□ -0.44
HMGA1-201ENST00000311487 OCIAD2Q56VL3 154 aa12.32□□□□□ -0.44
HMGA1-201ENST00000311487 TMEM97Q5BJF2 176 aa12.32□□□□□ -0.44
HMGA1-201ENST00000311487 CLPSL2Q6UWE3 100 aa12.32□□□□□ -0.44
HMGA1-201ENST00000311487 TMEM141Q96I45 108 aa12.32□□□□□ -0.44
HMGA1-201ENST00000311487 SACSQ9NZJ4 4579 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms