RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ALPK3Q96L96 1907 aa8.54□□□□□ -1.04
USP53-201ENST00000274030 M0QY20 66 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 ZNF843Q8N446 348 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 ODF3Q96PU9 254 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 BBC3Q96PG8 261 aaPredicted RBP8.53□□□□□ -1.04
USP53-201ENST00000274030 LYRM9A8MSI8 78 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 H3BQ85 93 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 C11orf71Q6IPW1 123 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 FAM19A5Q7Z5A7 132 aaPredicted RBP8.53□□□□□ -1.04
USP53-201ENST00000274030 G3V4G9 280 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 IGKV4-1P06312 121 aa8.53□□□□□ -1.04
USP53-201ENST00000274030 EBI3Q14213 229 aa8.52□□□□□ -1.04
USP53-201ENST00000274030 BPY2O14599 106 aa8.52□□□□□ -1.05
USP53-201ENST00000274030 IGLV2-18A0A075B6J9 118 aa8.52□□□□□ -1.05
USP53-201ENST00000274030 TRBV6-8A0A0A6YYG3 113 aa8.52□□□□□ -1.05
USP53-201ENST00000274030 SETD2Q9BYW2 2564 aaPredicted RBP8.52□□□□□ -1.05
USP53-201ENST00000274030 SDIM1Q6ZPB5 146 aa8.52□□□□□ -1.05
USP53-201ENST00000274030 RNF185Q96GF1 192 aa8.52□□□□□ -1.05
USP53-201ENST00000274030 TMEM223A0PJW6 202 aa8.51□□□□□ -1.05
USP53-201ENST00000274030 LY6G6DO95868 133 aa8.51□□□□□ -1.05
USP53-201ENST00000274030 HILS1P60008 231 aa8.51□□□□□ -1.05
USP53-201ENST00000274030 LOC100131303A0A0U1RQF7 123 aa8.51□□□□□ -1.05
USP53-201ENST00000274030 SMIM9A6NGZ8 99 aa8.51□□□□□ -1.05
USP53-201ENST00000274030 UPK3BQ9BT76 320 aa8.51□□□□□ -1.05
USP53-201ENST00000274030 CDSNQ15517 529 aa8.51□□□□□ -1.05
USP53-201ENST00000274030 LINC00308Q8TCZ7 52 aa8.5□□□□□ -1.05
USP53-201ENST00000274030 PRR9Q5T870 116 aa8.5□□□□□ -1.05
USP53-201ENST00000274030 M0R2N4 97 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 LINC01006Q8NI28 216 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 ZNF702PQ9H963 129 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 KIAA1549LQ6ZVL6 1849 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 IGKV2-28A0A075B6P5 120 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 IGKV2D-28P01615 120 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 IGLV2-11P01706 119 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 C14orf177Q52M58 125 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 C11orf21Q9P2W6 132 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 ABCA12Q86UK0 2595 aa8.49□□□□□ -1.05
USP53-201ENST00000274030 C6orf99Q4VX62 202 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 LINC00643Q86TS7 51 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 PRO3102Q9H379 93 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 TRIAP1O43715 76 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 GAS8-AS1O95177 125 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 HCFC1P51610 2035 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 MT-ATP8P03928 68 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 RBX1P62877 108 aa8.48□□□□□ -1.05
USP53-201ENST00000274030 RNASE3P12724 160 aaKnown RBP8.48□□□□□ -1.05
USP53-201ENST00000274030 PDE6GP18545 87 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 C1orf158Q8N1D5 194 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 IL17DQ8TAD2 202 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 PPDPFQ9H3Y8 114 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 TRBV6-4A0A1B0GX49 114 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 MIFP14174 115 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 C20orf197Q8N268 126 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.47□□□□□ -1.05
USP53-201ENST00000274030 LTBP2Q14767 1821 aa8.47□□□□□ -1.05
USP53-201ENST00000274030 IBA57-AS1B1ANH7 110 aa8.46□□□□□ -1.05
USP53-201ENST00000274030 FSTL3O95633 263 aa8.46□□□□□ -1.05
USP53-201ENST00000274030 SYCNQ0VAF6 134 aa8.46□□□□□ -1.06
USP53-201ENST00000274030 ENHOQ6UWT2 76 aa8.46□□□□□ -1.06
USP53-201ENST00000274030 PSMG3-AS1Q96PY0 264 aa8.46□□□□□ -1.06
USP53-201ENST00000274030 CENPFP49454 3210 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 SHISA2Q6UWI4 295 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 C3orf84H3BNL1 204 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 J3KT08 172 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 EDN2P20800 178 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 SMR3AQ99954 134 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 USP9XQ93008 2570 aaPredicted RBP8.45□□□□□ -1.06
USP53-201ENST00000274030 TSHBP01222 138 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 WFDC10BQ8IUB3 73 aa8.45□□□□□ -1.06
USP53-201ENST00000274030 FN1P02751 2386 aaKnown RBP8.45□□□□□ -1.06
USP53-201ENST00000274030 TRBV27A0A0K0K1C4 114 aa8.44□□□□□ -1.06
USP53-201ENST00000274030 AVPP01185 164 aa8.44□□□□□ -1.06
USP53-201ENST00000274030 NUP210LQ5VU65 1888 aa8.44□□□□□ -1.06
USP53-201ENST00000274030 H7C423 109 aa8.44□□□□□ -1.06
USP53-201ENST00000274030 Q8N6K4 173 aa8.44□□□□□ -1.06
USP53-201ENST00000274030 CLUHP3Q96NS8 147 aa8.44□□□□□ -1.06
USP53-201ENST00000274030 KPRPQ5T749 579 aaPredicted RBP8.44□□□□□ -1.06
USP53-201ENST00000274030 GOLGB1Q14789 3259 aaKnown RBP8.44□□□□□ -1.06
USP53-201ENST00000274030 NRACQ8N912 160 aa8.44□□□□□ -1.06
USP53-201ENST00000274030 OXLD1Q5BKU9 147 aa8.43□□□□□ -1.06
USP53-201ENST00000274030 U3KQK5 164 aa8.43□□□□□ -1.06
USP53-201ENST00000274030 A0A0J9YWU9 116 aa8.43□□□□□ -1.06
USP53-201ENST00000274030 CCKP06307 115 aa8.43□□□□□ -1.06
USP53-201ENST00000274030 SPINK6Q6UWN8 80 aa8.43□□□□□ -1.06
USP53-201ENST00000274030 SPANXB1Q9NS25 103 aaPredicted RBP8.42□□□□□ -1.06
USP53-201ENST00000274030 HRCT1Q6UXD1 115 aa8.42□□□□□ -1.06
USP53-201ENST00000274030 MPLKIPQ8TAP9 179 aa8.42□□□□□ -1.06
USP53-201ENST00000274030 RPL37AP8A6NKH3 93 aa8.42□□□□□ -1.06
USP53-201ENST00000274030 TRBV6-5A0A0K0K1A5 114 aa8.42□□□□□ -1.06
USP53-201ENST00000274030 SVIPQ8NHG7 77 aa8.41□□□□□ -1.06
USP53-201ENST00000274030 TRAV10A0A0B4J240 114 aa8.41□□□□□ -1.06
USP53-201ENST00000274030 NDUFV3P56181 108 aaKnown RBP8.41□□□□□ -1.06
USP53-201ENST00000274030 Q6ZQY7 126 aa8.41□□□□□ -1.06
USP53-201ENST00000274030 BRK1Q8WUW1 75 aa8.41□□□□□ -1.06
USP53-201ENST00000274030 SEC61GP60059 68 aa8.41□□□□□ -1.06
USP53-201ENST00000274030 CASC2Q6XLA1 102 aa8.41□□□□□ -1.06
USP53-201ENST00000274030 KLLNB2CW77 178 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 KRTAP10-9P60411 292 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 YPEL4Q96NS1 127 aa8.4□□□□□ -1.06
USP53-201ENST00000274030 LINC00959A0A1B0GUT2 108 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms