RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CASC2Q6XLA1 102 aa14.27□□□□□ -0.13
UPF1-201ENST00000262803 TIMM17BO60830 172 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 TCL1BO95988 128 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 IGKV4-1P06312 121 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 TMEM223A0PJW6 202 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 NUP210LQ5VU65 1888 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 DHRS4-AS1Q9P1J3 65 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 LINC00474Q9P2X8 69 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 EP400Q96L91 3159 aa14.26□□□□□ -0.13
UPF1-201ENST00000262803 LY6G6DO95868 133 aa14.25□□□□□ -0.13
UPF1-201ENST00000262803 ZNF702PQ9H963 129 aa14.25□□□□□ -0.13
UPF1-201ENST00000262803 TANC2Q9HCD6 1990 aa14.25□□□□□ -0.13
UPF1-201ENST00000262803 DSCAMO60469 2012 aa14.25□□□□□ -0.13
UPF1-201ENST00000262803 NDUFA7O95182 113 aa14.24□□□□□ -0.13
UPF1-201ENST00000262803 TNRC6BQ9UPQ9 1833 aaKnown RBP14.24□□□□□ -0.13
UPF1-201ENST00000262803 FAM110AQ9BQ89 295 aa14.24□□□□□ -0.13
UPF1-201ENST00000262803 IGLV4-3A0A075B6K6 122 aa14.24□□□□□ -0.13
UPF1-201ENST00000262803 LELP1Q5T871 98 aa14.24□□□□□ -0.13
UPF1-201ENST00000262803 MYO9AB2RTY4 2548 aa14.24□□□□□ -0.13
UPF1-201ENST00000262803 IGLV2-11P01706 119 aa14.23□□□□□ -0.13
UPF1-201ENST00000262803 NCOR2Q9Y618 2525 aa14.23□□□□□ -0.13
UPF1-201ENST00000262803 M0QY20 66 aa14.23□□□□□ -0.13
UPF1-201ENST00000262803 Q8N6K4 173 aa14.22□□□□□ -0.13
UPF1-201ENST00000262803 CD164L2Q6UWJ8 174 aa14.22□□□□□ -0.13
UPF1-201ENST00000262803 IGKV2D-26A0A0A0MRZ7 120 aa14.22□□□□□ -0.13
UPF1-201ENST00000262803 RNF185Q96GF1 192 aa14.22□□□□□ -0.13
UPF1-201ENST00000262803 IGF2RP11717 2491 aa14.22□□□□□ -0.13
UPF1-201ENST00000262803 ZNF22P17026 224 aaPredicted RBP14.22□□□□□ -0.13
UPF1-201ENST00000262803 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.22□□□□□ -0.13
UPF1-201ENST00000262803 CDKN2A-AS1Q9UH64 79 aa14.21□□□□□ -0.13
UPF1-201ENST00000262803 U3KQK5 164 aa14.21□□□□□ -0.13
UPF1-201ENST00000262803 K7ERS5 55 aa14.21□□□□□ -0.13
UPF1-201ENST00000262803 HCFC1P51610 2035 aa14.21□□□□□ -0.14
UPF1-201ENST00000262803 IGLV4-69A0A075B6H9 119 aa14.21□□□□□ -0.14
UPF1-201ENST00000262803 USP17L23D6RBM5 183 aa14.21□□□□□ -0.14
UPF1-201ENST00000262803 ABCA2Q9BZC7 2435 aa14.2□□□□□ -0.14
UPF1-201ENST00000262803 PIEZO1Q92508 2521 aa14.2□□□□□ -0.14
UPF1-201ENST00000262803 TRBV27A0A0K0K1C4 114 aa14.2□□□□□ -0.14
UPF1-201ENST00000262803 LOC107984640A0A0U1RRK4 108 aa14.2□□□□□ -0.14
UPF1-201ENST00000262803 M0R378 163 aa14.19□□□□□ -0.14
UPF1-201ENST00000262803 UBE2D1P51668 147 aa14.19□□□□□ -0.14
UPF1-201ENST00000262803 MAPKAPK5-AS1Q8N8E1 139 aa14.19□□□□□ -0.14
UPF1-201ENST00000262803 LINC00308Q8TCZ7 52 aa14.19□□□□□ -0.14
UPF1-201ENST00000262803 MRPS36P82909 103 aaKnown RBP14.19□□□□□ -0.14
UPF1-201ENST00000262803 LINC01006Q8NI28 216 aa14.18□□□□□ -0.14
UPF1-201ENST00000262803 COX17Q14061 63 aa14.18□□□□□ -0.14
UPF1-201ENST00000262803 MUC22E2RYF6 1773 aaPredicted RBP14.18□□□□□ -0.14
UPF1-201ENST00000262803 C10orf142B7Z368 130 aa14.17□□□□□ -0.14
UPF1-201ENST00000262803 TRAV23DV6A0A075B6W5 121 aa14.17□□□□□ -0.14
UPF1-201ENST00000262803 CHCHD7Q9BUK0 85 aa14.17□□□□□ -0.14
UPF1-201ENST00000262803 IGLV1-40P01703 118 aa14.16□□□□□ -0.14
UPF1-201ENST00000262803 WDR87Q6ZQQ6 2873 aa14.16□□□□□ -0.14
UPF1-201ENST00000262803 TRBV30A0A0K0K1B3 111 aa14.16□□□□□ -0.14
UPF1-201ENST00000262803 TLN1Q9Y490 2541 aaKnown RBP14.15□□□□□ -0.14
UPF1-201ENST00000262803 C10orf99Q6UWK7 81 aa14.15□□□□□ -0.14
UPF1-201ENST00000262803 FAM19A5Q7Z5A7 132 aaPredicted RBP14.14□□□□□ -0.15
UPF1-201ENST00000262803 Q8N976 141 aa14.14□□□□□ -0.15
UPF1-201ENST00000262803 RBX1P62877 108 aa14.14□□□□□ -0.15
UPF1-201ENST00000262803 PRR15LQ9BU68 103 aa14.14□□□□□ -0.15
UPF1-201ENST00000262803 KPRPQ5T749 579 aaPredicted RBP14.14□□□□□ -0.15
UPF1-201ENST00000262803 GOLGB1Q14789 3259 aaKnown RBP14.13□□□□□ -0.15
UPF1-201ENST00000262803 ATP5EP56381 51 aaPredicted RBP14.13□□□□□ -0.15
UPF1-201ENST00000262803 KLLNB2CW77 178 aa14.12□□□□□ -0.15
UPF1-201ENST00000262803 LINC00482Q8N8I6 264 aa14.12□□□□□ -0.15
UPF1-201ENST00000262803 NUPR2A6NF83 97 aa14.12□□□□□ -0.15
UPF1-201ENST00000262803 TEX49A0A1B0GTD5 131 aa14.11□□□□□ -0.15
UPF1-201ENST00000262803 BBC3Q96PG8 261 aaPredicted RBP14.11□□□□□ -0.15
UPF1-201ENST00000262803 C11orf21Q9P2W6 132 aa14.11□□□□□ -0.15
UPF1-201ENST00000262803 NRACQ8N912 160 aa14.11□□□□□ -0.15
UPF1-201ENST00000262803 C9orf85Q96MD7 179 aa14.1□□□□□ -0.15
UPF1-201ENST00000262803 PROK1P58294 105 aa14.1□□□□□ -0.15
UPF1-201ENST00000262803 V9GYY9 64 aa14.1□□□□□ -0.15
UPF1-201ENST00000262803 RNASE3P12724 160 aaKnown RBP14.09□□□□□ -0.15
UPF1-201ENST00000262803 PRR9Q5T870 116 aa14.09□□□□□ -0.15
UPF1-201ENST00000262803 PLA2G2AP14555 144 aa14.09□□□□□ -0.15
UPF1-201ENST00000262803 LRCOL1A6NCL2 159 aa14.08□□□□□ -0.16
UPF1-201ENST00000262803 F8WDY8 70 aa14.08□□□□□ -0.16
UPF1-201ENST00000262803 CEP192Q8TEP8 1941 aa14.08□□□□□ -0.16
UPF1-201ENST00000262803 MT-ATP8P03928 68 aa14.08□□□□□ -0.16
UPF1-201ENST00000262803 NDUFC1O43677 76 aa14.08□□□□□ -0.16
UPF1-201ENST00000262803 C2orf91Q6ZV80 131 aa14.08□□□□□ -0.16
UPF1-201ENST00000262803 ZNF580Q9UK33 172 aa14.08□□□□□ -0.16
UPF1-201ENST00000262803 TRIAP1O43715 76 aa14.07□□□□□ -0.16
UPF1-201ENST00000262803 UQCRQO14949 82 aa14.06□□□□□ -0.16
UPF1-201ENST00000262803 TSHBP01222 138 aa14.06□□□□□ -0.16
UPF1-201ENST00000262803 ARHGAP32A7KAX9 2087 aa14.06□□□□□ -0.16
UPF1-201ENST00000262803 LINC00959A0A1B0GUT2 108 aa14.06□□□□□ -0.16
UPF1-201ENST00000262803 Q8IZM0 81 aa14.06□□□□□ -0.16
UPF1-201ENST00000262803 C6orf99Q4VX62 202 aa14.05□□□□□ -0.16
UPF1-201ENST00000262803 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.05□□□□□ -0.16
UPF1-201ENST00000262803 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.05□□□□□ -0.16
UPF1-201ENST00000262803 GAS8-AS1O95177 125 aa14.05□□□□□ -0.16
UPF1-201ENST00000262803 BRI3O95415 125 aa14.04□□□□□ -0.16
UPF1-201ENST00000262803 MRPL55Q7Z7F7 128 aaKnown RBP14.04□□□□□ -0.16
UPF1-201ENST00000262803 CCKP06307 115 aa14.04□□□□□ -0.16
UPF1-201ENST00000262803 CRIP2P52943 208 aaPredicted RBP14.04□□□□□ -0.16
UPF1-201ENST00000262803 PRB2P02812 416 aaPredicted RBP14.04□□□□□ -0.16
UPF1-201ENST00000262803 SPTSSBQ8NFR3 76 aa14.04□□□□□ -0.16
UPF1-201ENST00000262803 XAGE1AQ9HD64 81 aa14.03□□□□□ -0.16
UPF1-201ENST00000262803 UBE2D4Q9Y2X8 147 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms