RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 STHQ8IWL8 128 aa10.96□□□□□ -0.65
DDX56-201ENST00000258772 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.96□□□□□ -0.65
DDX56-201ENST00000258772 ZNF469Q96JG9 3925 aaPredicted RBP10.96□□□□□ -0.65
DDX56-201ENST00000258772 MT-ATP8P03928 68 aa10.96□□□□□ -0.66
DDX56-201ENST00000258772 NPC2P61916 151 aa10.96□□□□□ -0.66
DDX56-201ENST00000258772 LINC01620Q4KN68 170 aa10.96□□□□□ -0.66
DDX56-201ENST00000258772 TRAV25A0A0B4J276 109 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 XGP55808 180 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 TMEM86BQ8N661 226 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 RNF183Q96D59 192 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 CHD6Q8TD26 2715 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 USP24Q9UPU5 2620 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 TRGV1A0A0A0MS02 117 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 TIMM17BO60830 172 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 COX6A2Q02221 97 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 IL17DQ8TAD2 202 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 TMEM101Q96IK0 257 aa10.95□□□□□ -0.66
DDX56-201ENST00000258772 KRTAP1-3Q8IUG1 177 aa10.94□□□□□ -0.66
DDX56-201ENST00000258772 YAE1D1Q9NRH1 226 aa10.94□□□□□ -0.66
DDX56-201ENST00000258772 ICOSQ9Y6W8 199 aa10.94□□□□□ -0.66
DDX56-201ENST00000258772 SONP18583 2426 aaKnown RBP10.94□□□□□ -0.66
DDX56-201ENST00000258772 UBR5O95071 2799 aaPredicted RBP10.93□□□□□ -0.66
DDX56-201ENST00000258772 NDUFA1O15239 70 aa10.93□□□□□ -0.66
DDX56-201ENST00000258772 C11orf44Q8N8P7 122 aa10.93□□□□□ -0.66
DDX56-201ENST00000258772 LINC01600Q96MT4 127 aa10.93□□□□□ -0.66
DDX56-201ENST00000258772 A0A1B0GV72 72 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 TMEM262E9PQX1 116 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 IFITM1P13164 125 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 ZNF843Q8N446 348 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 TRBV10-2A0A0K0K1G8 114 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 A0A1W2PRX2 142 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 LINC00694P0DN24 101 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 HERVK_113P63121 156 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 LINC00242Q5T6M2 205 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 EPG5Q9HCE0 2579 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 NOTCH3Q9UM47 2321 aa10.92□□□□□ -0.66
DDX56-201ENST00000258772 DAND5Q8N907 189 aa10.91□□□□□ -0.66
DDX56-201ENST00000258772 NTN5Q8WTR8 489 aaPredicted RBP10.91□□□□□ -0.66
DDX56-201ENST00000258772 IGLV5-39A0A0G2JS06 123 aa10.91□□□□□ -0.66
DDX56-201ENST00000258772 CCL24O00175 119 aa10.91□□□□□ -0.66
DDX56-201ENST00000258772 COX6CP09669 75 aa10.91□□□□□ -0.66
DDX56-201ENST00000258772 RPL36AP83881 106 aaKnown RBP10.91□□□□□ -0.66
DDX56-201ENST00000258772 Q6ZTI0 123 aa10.91□□□□□ -0.66
DDX56-201ENST00000258772 RPL36ALQ969Q0 106 aaKnown RBP10.91□□□□□ -0.66
DDX56-201ENST00000258772 TRBV10-1A0A0K0K1A3 114 aa10.9□□□□□ -0.66
DDX56-201ENST00000258772 DNAJC9-AS1A6NH13 148 aa10.9□□□□□ -0.66
DDX56-201ENST00000258772 K7EQD1 137 aa10.9□□□□□ -0.66
DDX56-201ENST00000258772 CKS1BP61024 79 aa10.9□□□□□ -0.66
DDX56-201ENST00000258772 NTM-AS1Q6ZSK4 140 aa10.9□□□□□ -0.66
DDX56-201ENST00000258772 FAM19A3Q7Z5A8 133 aa10.9□□□□□ -0.67
DDX56-201ENST00000258772 CSDC2Q9Y534 153 aaKnown RBP10.9□□□□□ -0.67
DDX56-201ENST00000258772 NDUFA7O95182 113 aa10.89□□□□□ -0.67
DDX56-201ENST00000258772 DAZ2Q13117 558 aaKnown RBP10.89□□□□□ -0.67
DDX56-201ENST00000258772 CIRBPQ14011 172 aaKnown RBP10.89□□□□□ -0.67
DDX56-201ENST00000258772 DAZ4Q86SG3 579 aaKnown RBP10.89□□□□□ -0.67
DDX56-201ENST00000258772 CITED1Q99966 193 aa10.89□□□□□ -0.67
DDX56-201ENST00000258772 DAZ3Q9NR90 486 aaKnown RBP10.89□□□□□ -0.67
DDX56-201ENST00000258772 Q9H8V8 135 aa10.89□□□□□ -0.67
DDX56-201ENST00000258772 TRAV4A0A0B4J268 109 aa10.88□□□□□ -0.67
DDX56-201ENST00000258772 TEX49A0A1B0GTD5 131 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 H7C423 109 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 RPL13AP40429 203 aaKnown RBP10.87□□□□□ -0.67
DDX56-201ENST00000258772 ITPR3Q14573 2671 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 TRAV13-1A0A0B4J241 112 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 SMIM1B2RUZ4 78 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 CLEC2BQ92478 149 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 ESM1Q9NQ30 184 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 APCP25054 2843 aa10.87□□□□□ -0.67
DDX56-201ENST00000258772 C2orf82Q6UX34 121 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 LINC00308Q8TCZ7 52 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 ZNF625Q96I27 306 aaPredicted RBP10.86□□□□□ -0.67
DDX56-201ENST00000258772 CDC42SE2Q9NRR3 84 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 C2CD3Q4AC94 2353 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 GAGE12JA6NER3 117 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 GAGE4Q13068 117 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 GAGE5Q13069 117 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 NOP10Q9NPE3 64 aaKnown RBP10.86□□□□□ -0.67
DDX56-201ENST00000258772 NF1P21359 2839 aa10.86□□□□□ -0.67
DDX56-201ENST00000258772 LST1O00453 97 aa10.85□□□□□ -0.67
DDX56-201ENST00000258772 TEX29Q8N6K0 151 aa10.85□□□□□ -0.67
DDX56-201ENST00000258772 WFDC11Q8NEX6 87 aa10.85□□□□□ -0.67
DDX56-201ENST00000258772 GIG44P09565 113 aaPredicted RBP10.85□□□□□ -0.67
DDX56-201ENST00000258772 NBPF19A0A087WUL8 3843 aa10.85□□□□□ -0.67
DDX56-201ENST00000258772 A0A0U1RRA0 63 aa10.84□□□□□ -0.67
DDX56-201ENST00000258772 H3BT86 120 aa10.84□□□□□ -0.67
DDX56-201ENST00000258772 UBE2WQ96B02 151 aa10.84□□□□□ -0.67
DDX56-201ENST00000258772 F5H768 121 aa10.83□□□□□ -0.68
DDX56-201ENST00000258772 CCDC168Q8NDH2 2452 aa10.83□□□□□ -0.68
DDX56-201ENST00000258772 JMJD1CQ15652 2540 aa10.82□□□□□ -0.68
DDX56-201ENST00000258772 PLAC8L1A1L4L8 177 aa10.82□□□□□ -0.68
DDX56-201ENST00000258772 CMC4P56277 68 aaPredicted RBP10.82□□□□□ -0.68
DDX56-201ENST00000258772 SETD2Q9BYW2 2564 aaPredicted RBP10.82□□□□□ -0.68
DDX56-201ENST00000258772 SOSTDC1Q6X4U4 206 aa10.81□□□□□ -0.68
DDX56-201ENST00000258772 PRIMA1Q86XR5 153 aa10.81□□□□□ -0.68
DDX56-201ENST00000258772 CUBNO60494 3623 aa10.81□□□□□ -0.68
DDX56-201ENST00000258772 COPS9Q8WXC6 57 aa10.81□□□□□ -0.68
DDX56-201ENST00000258772 C16orf74Q96GX8 76 aa10.81□□□□□ -0.68
DDX56-201ENST00000258772 TMEM243Q9BU79 118 aa10.81□□□□□ -0.68
DDX56-201ENST00000258772 WFDC10AQ9H1F0 79 aa10.81□□□□□ -0.68
DDX56-201ENST00000258772 TRAV8-4A0A0B4J246 113 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 550.6 ms