RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 H7C2G1 150 aa12.43□□□□□ -0.42
FOXA1-201ENST00000250448 SPINK13Q1W4C9 94 aa12.42□□□□□ -0.42
FOXA1-201ENST00000250448 M0R2P5 195 aa12.42□□□□□ -0.42
FOXA1-201ENST00000250448 SNRPD3P62318 126 aaKnown RBP12.42□□□□□ -0.42
FOXA1-201ENST00000250448 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.41□□□□□ -0.42
FOXA1-201ENST00000250448 C4orf3Q8WVX3 66 aa12.41□□□□□ -0.42
FOXA1-201ENST00000250448 TMEM262E9PQX1 116 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 K7EQG2 157 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 A0A0J9YXY3 114 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 Q1RN00 199 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 SMIM9A6NGZ8 99 aa12.4□□□□□ -0.43
FOXA1-201ENST00000250448 NHLRC4P0CG21 123 aaPredicted RBP12.4□□□□□ -0.43
FOXA1-201ENST00000250448 TENM1Q9UKZ4 2725 aa12.39□□□□□ -0.43
FOXA1-201ENST00000250448 TRGV11A0A075B6L2 103 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12JA6NER3 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE7O76087 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12FP0CL80 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12GP0CL81 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12IP0CL82 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 IGHV3-30-3P0DP02 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE4Q13068 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 ATXN8Q156A1 80 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 CYSRT1A8MQ03 144 aa12.37□□□□□ -0.43
FOXA1-201ENST00000250448 TIMM21Q9BVV7 248 aa12.37□□□□□ -0.43
FOXA1-201ENST00000250448 MRPL23Q16540 153 aaKnown RBP12.37□□□□□ -0.43
FOXA1-201ENST00000250448 LINC01620Q4KN68 170 aa12.37□□□□□ -0.43
FOXA1-201ENST00000250448 C16orf95Q9H693 158 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 PYGO1Q9Y3Y4 419 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 ADARB2-AS1A8MUL3 147 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 ATRQ13535 2644 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 LITAFQ99732 161 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 MRPS36P82909 103 aaKnown RBP12.35□□□□□ -0.43
FOXA1-201ENST00000250448 NTN5Q8WTR8 489 aaPredicted RBP12.35□□□□□ -0.43
FOXA1-201ENST00000250448 ZFAND6Q6FIF0 208 aa12.35□□□□□ -0.43
FOXA1-201ENST00000250448 FAM104AQ969W3 186 aa12.35□□□□□ -0.43
FOXA1-201ENST00000250448 EDA2RQ9HAV5 297 aa12.35□□□□□ -0.43
FOXA1-201ENST00000250448 TRBV30A0A0K0K1B3 111 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 TRAV8-3A0A0A6YYJ7 113 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 F8WDY8 70 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 TRIAP1O43715 76 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 VWFP04275 2813 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 CCL24O00175 119 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 KRTAP10-3P60369 221 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 IGHV3-73A0A0B4J1V6 119 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 PROK1P58294 105 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 LINC01600Q96MT4 127 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 RBMY1A1P0DJD3 496 aaKnown RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 RBMY1CP0DJD4 496 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 RBMY1FQ15415 496 aaKnown RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 CEMP1Q6PRD7 247 aaPredicted RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 C3orf56Q8N813 242 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 NOTCH3Q9UM47 2321 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 IGHV1-58A0A0C4DH39 117 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 SPANXDQ9BXN6 97 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 SPANXCQ9NY87 97 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 TRBV10-2A0A0K0K1G8 114 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 RNASE13Q5GAN3 156 aaKnown RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 TMEM61Q8N0U2 210 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 LOC107984640A0A0U1RRK4 108 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 CRLF1O75462 422 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 NDUFA12Q9UI09 145 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 PRSS2P07478 247 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 RPL13AP40429 203 aaKnown RBP12.3□□□□□ -0.44
FOXA1-201ENST00000250448 ADAMTSL4-AS1Q5T5F5 129 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 PEMTQ9UBM1 199 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 ICOSQ9Y6W8 199 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 NDUFA7O95182 113 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 DYNLRB2Q8TF09 96 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 HTN1P15515 57 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 MIAQ16674 131 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 F5H768 121 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 VSIG2Q96IQ7 327 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 TINCRA0A1B0GVN0 87 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 TEX49A0A1B0GTD5 131 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 H3BMM0 161 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 SNCGO76070 127 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 UBE2WQ96B02 151 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 SPANXA1Q9NS26 97 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 KNCNA6PVL3 124 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 TRAV8-4A0A0B4J246 113 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 CHCHD7Q9BUK0 85 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 UBE2D4Q9Y2X8 147 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 NACAE9PAV3 2078 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 A8MZ25 164 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 NPC2P61916 151 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 DEFB114Q30KQ6 69 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 C2orf82Q6UX34 121 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 GAGE2BQ13066 116 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 GAGE2EQ4V326 116 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 GAGE2DQ9UEU5 116 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 TRAV4A0A0B4J268 109 aa12.25□□□□□ -0.45
FOXA1-201ENST00000250448 DEFB131AP59861 70 aa12.25□□□□□ -0.45
FOXA1-201ENST00000250448 Q9UF83 564 aa12.25□□□□□ -0.45
FOXA1-201ENST00000250448 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.25□□□□□ -0.45
FOXA1-201ENST00000250448 IGKV2-29A2NJV5 120 aaPredicted RBP12.25□□□□□ -0.45
FOXA1-201ENST00000250448 COX6CP09669 75 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 Q6ZSN1 163 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.24□□□□□ -0.45
FOXA1-201ENST00000250448 H3BT86 120 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 H7C423 109 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms