RNA–Protein interactions for RNA: YNL022C

RCM1, Transcript of rRNA m5C methyltransferase, yeast

Gene RCM1, Length 1,473 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RCM1	YNL022C	SCS2	P40075	244 aa	Known RBP	4.81	□□□□□ -1.64
RCM1	YNL022C	ESL1	P40456	1118 aa		4.81	□□□□□ -1.64
RCM1	YNL022C	LYS4	P49367	693 aa	Predicted RBP	4.81	□□□□□ -1.64
RCM1	YNL022C	YLR224W	Q05947	369 aa		4.81	□□□□□ -1.64
RCM1	YNL022C	PDR18	P53756	1333 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	PCT1	P13259	424 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	YHR202W	P38887	602 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	UME6	P39001	836 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	VHR1	P40522	640 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	PFA3	P42836	336 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	VTC2	P43585	828 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	MAD3	P47074	515 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	SAP4	P53036	818 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	MTD1	Q02046	320 aa	Known RBP	4.8	□□□□□ -1.64
RCM1	YNL022C	CIA1	Q05583	330 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	YLR407W	Q06070	228 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	NCB2	Q92317	146 aa		4.8	□□□□□ -1.64
RCM1	YNL022C	RPS17A	P02407	136 aa	Known RBP	4.79	□□□□□ -1.64
RCM1	YNL022C	VAS1	P07806	1104 aa	Known RBP	4.79	□□□□□ -1.64
RCM1	YNL022C	RPS17B	P14127	136 aa	Known RBP	4.79	□□□□□ -1.64
RCM1	YNL022C	SEC21	P32074	935 aa	Known RBP	4.79	□□□□□ -1.64
RCM1	YNL022C	HXT4	P32467	576 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	MRPL36	P36531	177 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	VPS8	P39702	1274 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	ECM1	P39715	212 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	PSF2	P40359	213 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	YGL242C	P53066	181 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	MRPS35	P53292	345 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	UBP16	Q02863	499 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	MUS81	Q04149	632 aa	Predicted RBP	4.79	□□□□□ -1.64
RCM1	YNL022C	PEX19	Q07418	342 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	TRM11	Q12463	433 aa		4.79	□□□□□ -1.64
RCM1	YNL022C	SSK22	P25390	1331 aa	Predicted RBP	4.78	□□□□□ -1.64
RCM1	YNL022C	PMD1	P32634	1753 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	YLR358C	O13565	187 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	PHO5	P00635	467 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	TUB3	P09734	445 aa	Known RBP	4.78	□□□□□ -1.64
RCM1	YNL022C	YEL076C-A	P0CX16	216 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	YLR464W	P0CX17	216 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
RCM1	YNL022C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
RCM1	YNL022C	CBP3	P21560	335 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	SAN1	P22470	610 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	APT2	P36973	181 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	APN2	P38207	520 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	PLB1	P39105	664 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	YEL076C	P39971	216 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	MLC1	P53141	149 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	ARP4	P80428	489 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	EIS1	Q05050	843 aa	Known RBP	4.78	□□□□□ -1.64
RCM1	YNL022C	GRC3	Q07845	632 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	ENB1	Q08299	606 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	CTI6	Q08923	506 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	BUG1	Q12191	341 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	GPR1	Q12361	961 aa		4.78	□□□□□ -1.64
RCM1	YNL022C	MIS1	P09440	975 aa	Known RBP	4.77	□□□□□ -1.65
RCM1	YNL022C	ADH4	P10127	382 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	TOD6	P34219	525 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	YBR259W	P38338	688 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	BEM4	P39011	633 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	SWD1	P39706	426 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	SPC72	P39723	622 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	SSP120	P39931	234 aa	Known RBP	4.77	□□□□□ -1.65
RCM1	YNL022C	EXG2	P52911	562 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	PIB2	P53191	635 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	BRE5	P53741	515 aa	Known RBP	4.77	□□□□□ -1.65
RCM1	YNL022C	RIM20	Q12033	661 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	SAC3	P46674	1301 aa		4.77	□□□□□ -1.65
RCM1	YNL022C	YLR415C	O13578	112 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	SUP35	P05453	685 aa	Known RBP	4.76	□□□□□ -1.65
RCM1	YNL022C	CDC26	P14724	124 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	CLB4	P24871	460 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	RAD16	P31244	790 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	MUD2	P36084	527 aa	Known RBP	4.76	□□□□□ -1.65
RCM1	YNL022C	YEL068C	P39977	110 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	DJP1	P40564	432 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	IRC5	P43610	853 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	SET2	P46995	733 aa	Known RBP	4.76	□□□□□ -1.65
RCM1	YNL022C	BNA1	P47096	177 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	PRP31	P49704	494 aa	Predicted RBP	4.76	□□□□□ -1.65
RCM1	YNL022C	SXM1	Q04175	944 aa	Known RBP	4.76	□□□□□ -1.65
RCM1	YNL022C	MCM21	Q06675	368 aa		4.76	□□□□□ -1.65
RCM1	YNL022C	VIP1	Q06685	1146 aa	Known RBP	4.76	□□□□□ -1.65
RCM1	YNL022C	RIX7	Q07844	837 aa	Known RBP	4.76	□□□□□ -1.65
RCM1	YNL022C	CYB2	P00175	591 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	YCL049C	P25577	312 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	PGS1	P25578	521 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	KAR4	P25583	335 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	IMG2	P25642	146 aa	Predicted RBP	4.75	□□□□□ -1.65
RCM1	YNL022C	PAH1	P32567	862 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	AAP1	P37898	856 aa	Known RBP	4.75	□□□□□ -1.65
RCM1	YNL022C	UBS1	P38290	277 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	RPP1	P38786	293 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	ARC35	P53731	342 aa	Known RBP	4.75	□□□□□ -1.65
RCM1	YNL022C	CBK1	P53894	756 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	EAF7	P53911	425 aa	Known RBP	4.75	□□□□□ -1.65
RCM1	YNL022C	TIM50	Q02776	476 aa		4.75	□□□□□ -1.65
RCM1	YNL022C	ISA1	Q07821	250 aa	Predicted RBP	4.75	□□□□□ -1.65
RCM1	YNL022C	SNF1	P06782	633 aa	Known RBP	4.75	□□□□□ -1.65
RCM1	YNL022C	MTF2	P10849	440 aa		4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 36.6 ms