RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS38	YLR360W	TGL1	P34163	548 aa		4.15	□□□□□ -1.75
VPS38	YLR360W	SDS22	P36047	338 aa		4.15	□□□□□ -1.75
VPS38	YLR360W	HOT13	P36078	116 aa		4.15	□□□□□ -1.75
VPS38	YLR360W	GSM1	P42950	618 aa		4.15	□□□□□ -1.75
VPS38	YLR360W	YFL015C	P43578	164 aa		4.15	□□□□□ -1.75
VPS38	YLR360W	COS12	P53053	380 aa		4.15	□□□□□ -1.75
VPS38	YLR360W	MPD2	Q99316	277 aa		4.15	□□□□□ -1.75
VPS38	YLR360W	VAS1	P07806	1104 aa	Known RBP	4.14	□□□□□ -1.75
VPS38	YLR360W	AQY1	P0CD91	305 aa		4.14	□□□□□ -1.75
VPS38	YLR360W	TAF5	P38129	798 aa		4.14	□□□□□ -1.75
VPS38	YLR360W	EXO1	P39875	702 aa		4.14	□□□□□ -1.75
VPS38	YLR360W	PIP2	P52960	996 aa		4.14	□□□□□ -1.75
VPS38	YLR360W	RIM13	Q03792	727 aa		4.14	□□□□□ -1.75
VPS38	YLR360W	TMA7	Q3E764	64 aa	Known RBP	4.14	□□□□□ -1.75
VPS38	YLR360W	YMR084W	A2P2R3	262 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	AAC1	P04710	309 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	RPC34	P32910	317 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	GRX7	P38068	203 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	IDS2	P46958	469 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	ASK10	P48361	1146 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	CNM67	P53865	581 aa	Known RBP	4.13	□□□□□ -1.75
VPS38	YLR360W	TGL2	P54857	326 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	SEG1	Q04279	960 aa		4.13	□□□□□ -1.75
VPS38	YLR360W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
VPS38	YLR360W	ADH4	P10127	382 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	APN1	P22936	367 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	CDC5	P32562	705 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	NIC96	P34077	839 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	SDH8	P38345	138 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	MTG2	P38860	518 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	VFA1	P40080	203 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	PEX8	P53248	589 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	ACS1	Q01574	713 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	TRI1	Q05024	226 aa		4.12	□□□□□ -1.75
VPS38	YLR360W	AHA1	Q12449	350 aa	Known RBP	4.12	□□□□□ -1.75
VPS38	YLR360W	PGK1	P00560	416 aa	Known RBP	4.11	□□□□□ -1.75
VPS38	YLR360W	CTT1	P06115	562 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	LNP1	P38878	278 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	XBP1	P40489	647 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	OPT1	P40897	799 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	ATP23	P53722	227 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	ORM2	Q06144	216 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	CRT10	Q08226	957 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	PCL8	Q08966	492 aa		4.11	□□□□□ -1.75
VPS38	YLR360W	RPS7A	P26786	190 aa	Known RBP	4.1	□□□□□ -1.75
VPS38	YLR360W	PRE2	P30656	287 aa	Known RBP	4.1	□□□□□ -1.75
VPS38	YLR360W	SWD1	P39706	426 aa		4.1	□□□□□ -1.75
VPS38	YLR360W	ENT2	Q05785	613 aa		4.1	□□□□□ -1.75
VPS38	YLR360W	PTP1	P25044	335 aa		4.09	□□□□□ -1.75
VPS38	YLR360W	APD1	P38281	316 aa		4.09	□□□□□ -1.75
VPS38	YLR360W	IMA5	P40884	581 aa		4.09	□□□□□ -1.75
VPS38	YLR360W	TRS31	Q03337	283 aa		4.09	□□□□□ -1.75
VPS38	YLR360W	IRC3	Q06683	689 aa		4.09	□□□□□ -1.75
VPS38	YLR360W	GDA1	P32621	518 aa		4.08	□□□□□ -1.76
VPS38	YLR360W	POL31	P46957	487 aa		4.08	□□□□□ -1.76
VPS38	YLR360W	PUS4	P48567	403 aa	Known RBP	4.08	□□□□□ -1.76
VPS38	YLR360W	YNL092W	P53934	400 aa		4.08	□□□□□ -1.76
VPS38	YLR360W	CEG1	Q01159	459 aa	Predicted RBP	4.08	□□□□□ -1.76
VPS38	YLR360W	UBP16	Q02863	499 aa		4.08	□□□□□ -1.76
VPS38	YLR360W	YML119W	Q03208	357 aa		4.08	□□□□□ -1.76
VPS38	YLR360W	ARP7	Q12406	477 aa		4.08	□□□□□ -1.76
VPS38	YLR360W	BI2	P03873	423 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	TDA10	P42938	290 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	COG2	P53271	262 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	VPS64	Q03944	604 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	RAD33	Q04231	177 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	CRF1	Q04930	467 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	CRD1	Q07560	283 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	AFT2	Q08957	416 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	YOL114C	Q12322	202 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	YER175W-A	Q8TGU4	54 aa		4.07	□□□□□ -1.76
VPS38	YLR360W	SST2	P11972	698 aa	Known RBP	4.06	□□□□□ -1.76
VPS38	YLR360W	MBR1	P23493	339 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	BEM3	P32873	1128 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	YKL133C	P36066	463 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	YLF2	P38746	405 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	RRP8	P38961	392 aa	Known RBP	4.06	□□□□□ -1.76
VPS38	YLR360W	ARB1	P40024	610 aa	Known RBP	4.06	□□□□□ -1.76
VPS38	YLR360W	LAS21	P40367	830 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	NET1	P47035	1189 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	MAD3	P47074	515 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	TAN1	P53072	289 aa	Predicted RBP	4.06	□□□□□ -1.76
VPS38	YLR360W	AAD4	Q07747	329 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	FRE7	Q12333	620 aa		4.06	□□□□□ -1.76
VPS38	YLR360W	AMD2	P22580	549 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	URE2	P23202	354 aa	Known RBP	4.05	□□□□□ -1.76
VPS38	YLR360W	YCR061W	P25639	631 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	GSY2	P27472	705 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	PRP45	P28004	379 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS38	YLR360W	YJU2	P28320	278 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS38	YLR360W	ARO9	P38840	513 aa	Predicted RBP	4.05	□□□□□ -1.76
VPS38	YLR360W	MAM1	P40065	302 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	SAE2	P46946	345 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	BNA3	P47039	444 aa	Known RBP	4.05	□□□□□ -1.76
VPS38	YLR360W	AAT1	Q01802	451 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	MET14	Q02196	202 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	YPL071C	Q02864	156 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	YML053C	Q04978	212 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	CYK3	Q07533	885 aa		4.05	□□□□□ -1.76
VPS38	YLR360W	RDL1	Q12305	139 aa	Known RBP	4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 26.5 ms