RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 KRT82Q9NSB4 513 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 BZW2Q9Y6E2 419 aaKnown RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TRIM66O15016 1216 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PTGS2P35354 604 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 KIAA0753Q2KHM9 967 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 INTS8Q75QN2 995 aaKnown RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 BRSK2Q8IWQ3 736 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SAMD3Q8N6K7 520 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PPFIBP2Q8ND30 876 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 GTF3C6Q969F1 213 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SDF4Q9BRK5 362 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 ZBED2Q9BTP6 218 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 MMADHCQ9H3L0 296 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 STARD7Q9NQZ5 370 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 ZSCAN20P17040 1043 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 Q3C1V9 767 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SNX21Q969T3 373 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TRIM55Q9BYV6 548 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SPTA1P02549 2419 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 MACROD2A1Z1Q3 448 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SEC31AO94979 1220 aaKnown RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CHGBP05060 677 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TLDC2A0PJX2 215 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CDC25CP30307 473 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SMC1BQ8NDV3 1235 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 NISCHQ9Y2I1 1504 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 BOLA2-SMG1P6H3BVE0 249 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PARP9Q8IXQ6 854 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PPM1NQ8N819 430 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 AGBL1Q96MI9 1066 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CTAGE1Q96RT6 745 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 MTMR12Q9C0I1 747 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 NDEL1Q9GZM8 345 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 ZNF304Q9HCX3 659 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 KIAA1468Q9P260 1216 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PCDHGA3Q9Y5H0 932 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PPP2R3AQ06190 1150 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SMYD5Q6GMV2 418 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 POTEEQ6S8J3 1075 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 MMS22LQ6ZRQ5 1243 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 UCMAQ8WVF2 138 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 RTF1Q92541 710 aaKnown RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PCDH12Q9NPG4 1184 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PRMT3O60678 531 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 SNX2O60749 519 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CASTP20810 708 aaKnown RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 HALP42357 657 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TUBA1BP68363 451 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 MRPS5P82675 430 aaKnown RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 NSUN2Q08J23 767 aaKnown RBP eCLIP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 RAD51AP2Q09MP3 1159 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TUBA1AQ71U36 451 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CCDC170Q8IYT3 715 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 GLMNQ92990 594 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PRKRIP1Q9H875 184 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TACC1O75410 805 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 ZNF24P17028 368 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TTC17Q96AE7 1141 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 OMA1Q96E52 524 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TTC25Q96NG3 672 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 TUFT1Q9NNX1 390 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 POLG2Q9UHN1 485 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 MOSPD1Q9UJG1 213 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 EDARQ9UNE0 448 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CARD8Q9Y2G2 431 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 BUB1BO60566 1050 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 NFIAQ12857 509 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 ATP2B3Q16720 1220 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 PRR23CQ6ZRP0 262 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 JPH3Q8WXH2 748 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-221ENST00000641996 ALG1Q9BT22 464 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 HACD3Q9P035 362 aa4.01□□□□□ -1.77
SCN1A-221ENST00000641996 CPLX1O14810 134 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 RETREG1Q9H6L5 497 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 DDX56Q9NY93 547 aaKnown RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 CAPN11Q9UMQ6 739 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 ARPC4P59998 168 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 ZNF574Q6ZN55 896 aaPredicted RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 EFCAB13Q8IY85 973 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TBC1D7Q9P0N9 293 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 ROCK2O75116 1388 aaKnown RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 DNAJB2P25686 324 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 CCNHP51946 323 aaPredicted RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 ARHGAP29Q52LW3 1261 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 CEP295NLQ96MC4 621 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TTLL13PA6NNM8 815 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 AP3B1O00203 1094 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 SUPT3HO75486 399 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 MYBL2P10244 700 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 RIPK4P57078 832 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 MXRA7P84157 204 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 RASA3Q14644 834 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TTC1Q99614 292 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 INPP5FQ9Y2H2 1132 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 OTOFQ9HC10 1997 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 AKR1B10O60218 316 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TXLNAP40222 546 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 PAWRQ96IZ0 340 aaKnown RBP4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms