RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ADORA1P30542 326 aa18.68■□□□□ 0.58
SYNE2-228ENST00000639659 SLAIN1Q8ND83 568 aa18.68■□□□□ 0.58
SYNE2-228ENST00000639659 SMCR8Q8TEV9 937 aaPredicted RBP18.68■□□□□ 0.58
SYNE2-228ENST00000639659 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.68■□□□□ 0.58
SYNE2-228ENST00000639659 ABCF2Q9UG63 623 aa18.68■□□□□ 0.58
SYNE2-228ENST00000639659 PA2G4Q9UQ80 394 aaKnown RBP18.68■□□□□ 0.58
SYNE2-228ENST00000639659 ZNF521Q96K83 1311 aa18.68■□□□□ 0.58
SYNE2-228ENST00000639659 TRIM75PA6NK02 468 aa18.67■□□□□ 0.58
SYNE2-228ENST00000639659 ELNP15502 786 aa18.67■□□□□ 0.58
SYNE2-228ENST00000639659 FASTKD5Q7L8L6 764 aaKnown RBP18.67■□□□□ 0.58
SYNE2-228ENST00000639659 CCDC84Q86UT8 332 aaPredicted RBP18.67■□□□□ 0.58
SYNE2-228ENST00000639659 U2AF1L4Q8WU68 220 aaKnown RBP18.67■□□□□ 0.58
SYNE2-228ENST00000639659 A0A0G2JLL6 359 aaPredicted RBP18.66■□□□□ 0.58
SYNE2-228ENST00000639659 E9PSI1 815 aa18.66■□□□□ 0.58
SYNE2-228ENST00000639659 TNPO2O14787 897 aaKnown RBP18.66■□□□□ 0.58
SYNE2-228ENST00000639659 ADCY3O60266 1144 aa18.66■□□□□ 0.58
SYNE2-228ENST00000639659 PTPRAP18433 802 aa18.66■□□□□ 0.58
SYNE2-228ENST00000639659 PRRT2Q7Z6L0 340 aaPredicted RBP18.66■□□□□ 0.58
SYNE2-228ENST00000639659 DOCK1Q14185 1865 aa18.66■□□□□ 0.58
SYNE2-228ENST00000639659 PHF20L1A8MW92 1017 aa18.65■□□□□ 0.58
SYNE2-228ENST00000639659 CIAO1O76071 339 aa18.65■□□□□ 0.58
SYNE2-228ENST00000639659 INHAP05111 366 aa18.65■□□□□ 0.58
SYNE2-228ENST00000639659 FLT3LGP49771 235 aa18.65■□□□□ 0.58
SYNE2-228ENST00000639659 ZGPATQ8N5A5 531 aaKnown RBP18.65■□□□□ 0.58
SYNE2-228ENST00000639659 NR2E3Q9Y5X4 410 aa18.65■□□□□ 0.58
SYNE2-228ENST00000639659 SALL1Q9NSC2 1324 aa18.65■□□□□ 0.58
SYNE2-228ENST00000639659 ATRNL1Q5VV63 1379 aa18.65■□□□□ 0.58
SYNE2-228ENST00000639659 DDTLA6NHG4 134 aaPredicted RBP18.64■□□□□ 0.57
SYNE2-228ENST00000639659 SEMA3EO15041 775 aa18.64■□□□□ 0.57
SYNE2-228ENST00000639659 ENTPD3O75355 529 aa18.64■□□□□ 0.57
SYNE2-228ENST00000639659 TFRCP02786 760 aaKnown RBP18.64■□□□□ 0.57
SYNE2-228ENST00000639659 IL15P40933 162 aaPredicted RBP18.64■□□□□ 0.57
SYNE2-228ENST00000639659 BTDP43251 543 aa18.64■□□□□ 0.57
SYNE2-228ENST00000639659 CCDC102BQ68D86 513 aa18.64■□□□□ 0.57
SYNE2-228ENST00000639659 SH3BP5LQ7L8J4 393 aa18.64■□□□□ 0.57
SYNE2-228ENST00000639659 DDX4Q9NQI0 724 aaKnown RBP18.64■□□□□ 0.57
SYNE2-228ENST00000639659 PTPRFP10586 1907 aa18.63■□□□□ 0.57
SYNE2-228ENST00000639659 ZNF316A6NFI3 1004 aaPredicted RBP18.63■□□□□ 0.57
SYNE2-228ENST00000639659 FAM196BA6NMK8 535 aa18.63■□□□□ 0.57
SYNE2-228ENST00000639659 RASGRF1Q13972 1273 aa18.63■□□□□ 0.57
SYNE2-228ENST00000639659 ANKRD13CQ8N6S4 541 aa18.63■□□□□ 0.57
SYNE2-228ENST00000639659 DEFB118Q96PH6 123 aa18.63■□□□□ 0.57
SYNE2-228ENST00000639659 IDI2Q9BXS1 227 aa18.63■□□□□ 0.57
SYNE2-228ENST00000639659 AFG3L2Q9Y4W6 797 aa18.63■□□□□ 0.57
SYNE2-228ENST00000639659 EVI5O60447 810 aa18.62■□□□□ 0.57
SYNE2-228ENST00000639659 SGPL1O95470 568 aa18.62■□□□□ 0.57
SYNE2-228ENST00000639659 UBE2Q1Q7Z7E8 422 aa18.62■□□□□ 0.57
SYNE2-228ENST00000639659 SLF2Q8IX21 1173 aa18.62■□□□□ 0.57
SYNE2-228ENST00000639659 FBXO3Q9UK99 471 aa18.62■□□□□ 0.57
SYNE2-228ENST00000639659 GAKO14976 1311 aa18.62■□□□□ 0.57
SYNE2-228ENST00000639659 RFX7Q2KHR2 1363 aa18.61■□□□□ 0.57
SYNE2-228ENST00000639659 ZBTB7BO15156 539 aaPredicted RBP18.61■□□□□ 0.57
SYNE2-228ENST00000639659 TIMM10P62072 90 aa18.61■□□□□ 0.57
SYNE2-228ENST00000639659 ALDH1L2Q3SY69 923 aa18.61■□□□□ 0.57
SYNE2-228ENST00000639659 COA7Q96BR5 231 aa18.61■□□□□ 0.57
SYNE2-228ENST00000639659 PHIPQ8WWQ0 1821 aa18.6■□□□□ 0.57
SYNE2-228ENST00000639659 MROH7-TTC4A0A0A0MT08 1334 aa18.6■□□□□ 0.57
SYNE2-228ENST00000639659 CTNND1O60716 968 aaKnown RBP18.6■□□□□ 0.57
SYNE2-228ENST00000639659 SLFN5Q08AF3 891 aa18.6■□□□□ 0.57
SYNE2-228ENST00000639659 TREML2Q5T2D2 321 aa18.6■□□□□ 0.57
SYNE2-228ENST00000639659 SPTY2D1Q68D10 685 aaPredicted RBP18.6■□□□□ 0.57
SYNE2-228ENST00000639659 ERICH6Q7L0X2 663 aa18.6■□□□□ 0.57
SYNE2-228ENST00000639659 CDCA7LQ96GN5 454 aa18.6■□□□□ 0.57
SYNE2-228ENST00000639659 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.6■□□□□ 0.57
SYNE2-228ENST00000639659 NOB1Q9ULX3 412 aaKnown RBP18.6■□□□□ 0.57
SYNE2-228ENST00000639659 AGTPBP1Q9UPW5 1226 aa18.6■□□□□ 0.57
SYNE2-228ENST00000639659 NEUROD6Q96NK8 337 aa18.59■□□□□ 0.57
SYNE2-228ENST00000639659 PNMA3Q9UL41 463 aa18.59■□□□□ 0.57
SYNE2-228ENST00000639659 SLC45A1Q9Y2W3 748 aa18.59■□□□□ 0.57
SYNE2-228ENST00000639659 A0A1B0GUL7 405 aa18.58■□□□□ 0.56
SYNE2-228ENST00000639659 MECOMQ03112 1051 aa18.58■□□□□ 0.56
SYNE2-228ENST00000639659 TFCP2Q12800 502 aa18.58■□□□□ 0.56
SYNE2-228ENST00000639659 XAGE2Q96GT9 111 aa18.58■□□□□ 0.56
SYNE2-228ENST00000639659 MEIS3Q99687 375 aa18.58■□□□□ 0.56
SYNE2-228ENST00000639659 HDAC5Q9UQL6 1122 aa18.58■□□□□ 0.56
SYNE2-228ENST00000639659 SZT2Q5T011 3432 aa18.58■□□□□ 0.56
SYNE2-228ENST00000639659 SPP2Q13103 211 aa18.57■□□□□ 0.56
SYNE2-228ENST00000639659 IRF5Q13568 498 aa18.57■□□□□ 0.56
SYNE2-228ENST00000639659 GORABQ5T7V8 394 aa18.57■□□□□ 0.56
SYNE2-228ENST00000639659 PXYLP1Q8TE99 480 aa18.57■□□□□ 0.56
SYNE2-228ENST00000639659 PAWRQ96IZ0 340 aaKnown RBP18.57■□□□□ 0.56
SYNE2-228ENST00000639659 API5Q9BZZ5 524 aaKnown RBP18.57■□□□□ 0.56
SYNE2-228ENST00000639659 RAI14Q9P0K7 980 aa18.57■□□□□ 0.56
SYNE2-228ENST00000639659 ATAD5Q96QE3 1844 aa18.57■□□□□ 0.56
SYNE2-228ENST00000639659 DOCK3Q8IZD9 2030 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 SRGAP3O43295 1099 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 HMGCS2P54868 508 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 MVPQ14764 893 aaKnown RBP18.56■□□□□ 0.56
SYNE2-228ENST00000639659 PI16Q6UXB8 463 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 C7orf61Q8IZ16 206 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 DIS3LQ8TF46 1054 aaKnown RBP18.56■□□□□ 0.56
SYNE2-228ENST00000639659 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.56■□□□□ 0.56
SYNE2-228ENST00000639659 COPRSQ9NQ92 184 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 STAP2Q9UGK3 403 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 AKAP2Q9Y2D5 859 aa18.56■□□□□ 0.56
SYNE2-228ENST00000639659 RANBP2P49792 3224 aaKnown RBP18.56■□□□□ 0.56
SYNE2-228ENST00000639659 FAM110CQ1W6H9 321 aa18.55■□□□□ 0.56
SYNE2-228ENST00000639659 TBC1D9Q6ZT07 1266 aa18.55■□□□□ 0.56
SYNE2-228ENST00000639659 PRO3102Q9H379 93 aa18.55■□□□□ 0.56
SYNE2-228ENST00000639659 GPR75-ASB3A0A0A6YYF3 556 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms