RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZKSCAN4Q969J2 545 aaPredicted RBP23.55■■□□□ 1.36
CLN3-260ENST00000637578 KIF1BPQ96EK5 621 aa23.55■■□□□ 1.36
CLN3-260ENST00000637578 IGF2BP3O00425 579 aaKnown RBP eCLIP23.54■■□□□ 1.36
CLN3-260ENST00000637578 RAB11FIP3O75154 756 aa23.54■■□□□ 1.36
CLN3-260ENST00000637578 PTPN18Q99952 460 aa23.54■■□□□ 1.36
CLN3-260ENST00000637578 IL1RAPL2Q9NP60 686 aa23.54■■□□□ 1.36
CLN3-260ENST00000637578 ERO1BQ86YB8 467 aa23.53■■□□□ 1.36
CLN3-260ENST00000637578 R3HDMLQ9H3Y0 253 aa23.53■■□□□ 1.36
CLN3-260ENST00000637578 ABHD8Q96I13 439 aa23.52■■□□□ 1.36
CLN3-260ENST00000637578 PIH1D3Q9NQM4 214 aaKnown RBP23.52■■□□□ 1.36
CLN3-260ENST00000637578 DDTLA6NHG4 134 aaPredicted RBP23.52■■□□□ 1.36
CLN3-260ENST00000637578 INPP5BP32019 993 aa23.52■■□□□ 1.36
CLN3-260ENST00000637578 PPP4CP60510 307 aa23.52■■□□□ 1.36
CLN3-260ENST00000637578 NAA16Q6N069 864 aaPredicted RBP23.52■■□□□ 1.36
CLN3-260ENST00000637578 CLASRPQ8N2M8 674 aaKnown RBP23.52■■□□□ 1.36
CLN3-260ENST00000637578 MCOLN1Q9GZU1 580 aa23.52■■□□□ 1.36
CLN3-260ENST00000637578 PHF20L1A8MW92 1017 aa23.51■■□□□ 1.35
CLN3-260ENST00000637578 GPR25O00155 361 aa23.51■■□□□ 1.35
CLN3-260ENST00000637578 GTF2A2P52657 109 aa23.51■■□□□ 1.35
CLN3-260ENST00000637578 NOL9Q5SY16 702 aaKnown RBP23.51■■□□□ 1.35
CLN3-260ENST00000637578 OTUD5Q96G74 571 aa23.51■■□□□ 1.35
CLN3-260ENST00000637578 OTUD7BQ6GQQ9 843 aa23.5■■□□□ 1.35
CLN3-260ENST00000637578 ADGRA1Q86SQ6 560 aa23.5■■□□□ 1.35
CLN3-260ENST00000637578 ZNF296Q8WUU4 475 aaPredicted RBP23.5■■□□□ 1.35
CLN3-260ENST00000637578 BRI3BPQ8WY22 251 aa23.5■■□□□ 1.35
CLN3-260ENST00000637578 PPATQ06203 517 aa23.49■■□□□ 1.35
CLN3-260ENST00000637578 PPIL2Q13356 520 aa23.49■■□□□ 1.35
CLN3-260ENST00000637578 PICALMQ13492 652 aa23.49■■□□□ 1.35
CLN3-260ENST00000637578 DGKZQ13574 1117 aa23.49■■□□□ 1.35
CLN3-260ENST00000637578 IRF6O14896 467 aa23.48■■□□□ 1.35
CLN3-260ENST00000637578 CAPN15O75808 1086 aa23.48■■□□□ 1.35
CLN3-260ENST00000637578 COL2A1P02458 1487 aaPredicted RBP23.48■■□□□ 1.35
CLN3-260ENST00000637578 APBB1O00213 710 aa23.48■■□□□ 1.35
CLN3-260ENST00000637578 TBC1D12O60347 775 aa23.48■■□□□ 1.35
CLN3-260ENST00000637578 BAG3O95817 575 aa23.48■■□□□ 1.35
CLN3-260ENST00000637578 TMED8Q6PL24 325 aaPredicted RBP23.48■■□□□ 1.35
CLN3-260ENST00000637578 ZSCAN29Q8IWY8 852 aaPredicted RBP23.48■■□□□ 1.35
CLN3-260ENST00000637578 SH3RF3Q8TEJ3 882 aaPredicted RBP23.48■■□□□ 1.35
CLN3-260ENST00000637578 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.48■■□□□ 1.35
CLN3-260ENST00000637578 ANTXR1Q9H6X2 564 aa23.48■■□□□ 1.35
CLN3-260ENST00000637578 NDUFB9Q9Y6M9 179 aa23.48■■□□□ 1.35
CLN3-260ENST00000637578 MAST2Q6P0Q8 1798 aa23.47■■□□□ 1.35
CLN3-260ENST00000637578 AK9Q5TCS8 1911 aa23.47■■□□□ 1.35
CLN3-260ENST00000637578 CCL15-CCL14A0A0B4J2E2 113 aa23.47■■□□□ 1.35
CLN3-260ENST00000637578 CENPBP07199 599 aaPredicted RBP23.47■■□□□ 1.35
CLN3-260ENST00000637578 PLCG2P16885 1265 aa23.47■■□□□ 1.35
CLN3-260ENST00000637578 CCL15Q16663 113 aa23.47■■□□□ 1.35
CLN3-260ENST00000637578 CTU1Q7Z7A3 348 aaKnown RBP23.47■■□□□ 1.35
CLN3-260ENST00000637578 NOL10Q9BSC4 688 aaKnown RBP23.47■■□□□ 1.35
CLN3-260ENST00000637578 OSBPL5Q9H0X9 879 aaPredicted RBP23.47■■□□□ 1.35
CLN3-260ENST00000637578 AATFQ9NY61 560 aaKnown RBP eCLIP23.47■■□□□ 1.35
CLN3-260ENST00000637578 IFIT2P09913 472 aaKnown RBP23.46■■□□□ 1.35
CLN3-260ENST00000637578 TEX11Q8IYF3 940 aa23.46■■□□□ 1.35
CLN3-260ENST00000637578 FKTNO75072 461 aa23.45■■□□□ 1.34
CLN3-260ENST00000637578 CETPP11597 493 aa23.45■■□□□ 1.34
CLN3-260ENST00000637578 SNAPC2Q13487 334 aa23.45■■□□□ 1.34
CLN3-260ENST00000637578 KCNH4Q9UQ05 1017 aa23.45■■□□□ 1.34
CLN3-260ENST00000637578 MYO5AQ9Y4I1 1855 aaKnown RBP23.45■■□□□ 1.34
CLN3-260ENST00000637578 IDH1O75874 414 aaKnown RBP23.44■■□□□ 1.34
CLN3-260ENST00000637578 CRHR2Q13324 411 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 CRBNQ96SW2 442 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 DOCK2Q92608 1830 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 SLURP2P0DP57 97 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 CYP7A1P22680 504 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 SCYL3Q8IZE3 742 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 FAM43AQ8N2R8 423 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 DCTPP1Q9H773 170 aa23.44■■□□□ 1.34
CLN3-260ENST00000637578 ZCCHC17Q9NP64 241 aaKnown RBP23.44■■□□□ 1.34
CLN3-260ENST00000637578 CTNND1O60716 968 aaKnown RBP23.43■■□□□ 1.34
CLN3-260ENST00000637578 MAP3K12Q12852 859 aa23.43■■□□□ 1.34
CLN3-260ENST00000637578 TTF1Q15361 905 aaPredicted RBP23.43■■□□□ 1.34
CLN3-260ENST00000637578 LRRCC1Q9C099 1032 aa23.43■■□□□ 1.34
CLN3-260ENST00000637578 CERS3Q8IU89 383 aa23.42■■□□□ 1.34
CLN3-260ENST00000637578 MAGEB6Q8N7X4 407 aa23.42■■□□□ 1.34
CLN3-260ENST00000637578 DHX36Q9H2U1 1008 aaKnown RBP23.42■■□□□ 1.34
CLN3-260ENST00000637578 BTBD19C9JJ37 291 aa23.41■■□□□ 1.34
CLN3-260ENST00000637578 PTPRAP18433 802 aa23.41■■□□□ 1.34
CLN3-260ENST00000637578 ATP5JP18859 108 aa23.41■■□□□ 1.34
CLN3-260ENST00000637578 PKN2Q16513 984 aaKnown RBP23.41■■□□□ 1.34
CLN3-260ENST00000637578 TGFBRAP1Q8WUH2 860 aa23.41■■□□□ 1.34
CLN3-260ENST00000637578 CXCL11O14625 94 aa23.4■■□□□ 1.34
CLN3-260ENST00000637578 MOGSQ13724 837 aa23.4■■□□□ 1.34
CLN3-260ENST00000637578 METTL16Q86W50 562 aaKnown RBP23.4■■□□□ 1.34
CLN3-260ENST00000637578 PCDHB15Q9Y5E8 787 aa23.4■■□□□ 1.34
CLN3-260ENST00000637578 FLT1P17948 1338 aa23.4■■□□□ 1.34
CLN3-260ENST00000637578 DYNLL1P63167 89 aaKnown RBP23.4■■□□□ 1.34
CLN3-260ENST00000637578 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.4■■□□□ 1.34
CLN3-260ENST00000637578 PI4KBQ9UBF8 816 aa23.4■■□□□ 1.34
CLN3-260ENST00000637578 HERC5Q9UII4 1024 aaKnown RBP23.4■■□□□ 1.34
CLN3-260ENST00000637578 ZFYVE28Q9HCC9 887 aa23.39■■□□□ 1.33
CLN3-260ENST00000637578 PICK1Q9NRD5 415 aa23.39■■□□□ 1.33
CLN3-260ENST00000637578 AFG3L2Q9Y4W6 797 aa23.39■■□□□ 1.33
CLN3-260ENST00000637578 ZHX2Q9Y6X8 837 aa23.39■■□□□ 1.33
CLN3-260ENST00000637578 IRX6P78412 446 aaPredicted RBP23.38■■□□□ 1.33
CLN3-260ENST00000637578 TAF1CQ15572 869 aaPredicted RBP23.38■■□□□ 1.33
CLN3-260ENST00000637578 ANKRD23Q86SG2 305 aa23.38■■□□□ 1.33
CLN3-260ENST00000637578 MAPKAPK5Q8IW41 473 aa23.38■■□□□ 1.33
CLN3-260ENST00000637578 MIGA1Q8NAN2 632 aa23.38■■□□□ 1.33
CLN3-260ENST00000637578 FAM196BA6NMK8 535 aa23.37■■□□□ 1.33
CLN3-260ENST00000637578 GOLIM4O00461 696 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms