RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TAOK2Q9UL54 1235 aa22.16■■□□□ 1.14
CLN3-259ENST00000637551 GOLIM4O00461 696 aa22.15■■□□□ 1.14
CLN3-259ENST00000637551 SLC10A3P09131 477 aa22.15■■□□□ 1.14
CLN3-259ENST00000637551 ANKRD45Q5TZF3 282 aa22.15■■□□□ 1.14
CLN3-259ENST00000637551 DLK2Q6UY11 383 aa22.15■■□□□ 1.14
CLN3-259ENST00000637551 DNAJC2Q99543 621 aaKnown RBP22.15■■□□□ 1.14
CLN3-259ENST00000637551 BOLA2Q9H3K6 86 aa22.15■■□□□ 1.14
CLN3-259ENST00000637551 ANTXR1Q9H6X2 564 aa22.15■■□□□ 1.14
CLN3-259ENST00000637551 CYP7A1P22680 504 aa22.14■■□□□ 1.13
CLN3-259ENST00000637551 RGS3P49796 1198 aa22.14■■□□□ 1.13
CLN3-259ENST00000637551 MAP3K10Q02779 954 aa22.14■■□□□ 1.13
CLN3-259ENST00000637551 NUCB1Q02818 461 aa22.14■■□□□ 1.13
CLN3-259ENST00000637551 NFIAQ12857 509 aa22.14■■□□□ 1.13
CLN3-259ENST00000637551 UBE3CQ15386 1083 aa22.14■■□□□ 1.13
CLN3-259ENST00000637551 ANKRD13AQ8IZ07 590 aa22.14■■□□□ 1.13
CLN3-259ENST00000637551 DHX36Q9H2U1 1008 aaKnown RBP22.14■■□□□ 1.13
CLN3-259ENST00000637551 ZFYP08048 801 aaPredicted RBP22.13■■□□□ 1.13
CLN3-259ENST00000637551 PDE6AP16499 860 aa22.13■■□□□ 1.13
CLN3-259ENST00000637551 CACNB3P54284 484 aa22.13■■□□□ 1.13
CLN3-259ENST00000637551 TTLL12Q14166 644 aaPredicted RBP22.13■■□□□ 1.13
CLN3-259ENST00000637551 SLC9C2Q5TAH2 1124 aa22.13■■□□□ 1.13
CLN3-259ENST00000637551 PRAMEF18Q5VWM3 479 aa22.13■■□□□ 1.13
CLN3-259ENST00000637551 MAGEB6Q8N7X4 407 aa22.13■■□□□ 1.13
CLN3-259ENST00000637551 PI4K2BQ8TCG2 481 aa22.13■■□□□ 1.13
CLN3-259ENST00000637551 ANGEL1Q9UNK9 670 aaKnown RBP22.13■■□□□ 1.13
CLN3-259ENST00000637551 SCAF8Q9UPN6 1271 aaKnown RBP22.13■■□□□ 1.13
CLN3-259ENST00000637551 FAM155AB1AL88 458 aaPredicted RBP22.12■■□□□ 1.13
CLN3-259ENST00000637551 TBC1D12O60347 775 aa22.12■■□□□ 1.13
CLN3-259ENST00000637551 ZBTB48P10074 688 aaPredicted RBP22.12■■□□□ 1.13
CLN3-259ENST00000637551 ZNF157P51786 506 aaPredicted RBP22.12■■□□□ 1.13
CLN3-259ENST00000637551 CHD1LQ86WJ1 897 aa22.12■■□□□ 1.13
CLN3-259ENST00000637551 TEX11Q8IYF3 940 aa22.12■■□□□ 1.13
CLN3-259ENST00000637551 KBTBD3Q8NAB2 608 aa22.12■■□□□ 1.13
CLN3-259ENST00000637551 TCRBV5S4A2TA0A5A2 114 aa22.11■■□□□ 1.13
CLN3-259ENST00000637551 USP2O75604 605 aaPredicted RBP22.11■■□□□ 1.13
CLN3-259ENST00000637551 ADD2P35612 726 aa22.11■■□□□ 1.13
CLN3-259ENST00000637551 DGKZQ13574 1117 aa22.11■■□□□ 1.13
CLN3-259ENST00000637551 ADGRA1Q86SQ6 560 aa22.11■■□□□ 1.13
CLN3-259ENST00000637551 RASAL3Q86YV0 1011 aa22.11■■□□□ 1.13
CLN3-259ENST00000637551 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.11■■□□□ 1.13
CLN3-259ENST00000637551 OSBPL5Q9H0X9 879 aaPredicted RBP22.11■■□□□ 1.13
CLN3-259ENST00000637551 OSBPL3Q9H4L5 887 aa22.11■■□□□ 1.13
CLN3-259ENST00000637551 AATFQ9NY61 560 aaKnown RBP eCLIP22.11■■□□□ 1.13
CLN3-259ENST00000637551 DDX60LQ5H9U9 1706 aaKnown RBP22.11■■□□□ 1.13
CLN3-259ENST00000637551 IGHDP01880 384 aa22.1■■□□□ 1.13
CLN3-259ENST00000637551 CSRNP1Q96S65 589 aa22.1■■□□□ 1.13
CLN3-259ENST00000637551 RIOK1Q9BRS2 568 aaKnown RBP22.1■■□□□ 1.13
CLN3-259ENST00000637551 ZNF341Q9BYN7 854 aa22.1■■□□□ 1.13
CLN3-259ENST00000637551 ZNF112Q9UJU3 913 aa22.1■■□□□ 1.13
CLN3-259ENST00000637551 CENPBP07199 599 aaPredicted RBP22.09■■□□□ 1.13
CLN3-259ENST00000637551 PDE1AP54750 535 aa22.09■■□□□ 1.13
CLN3-259ENST00000637551 DDX4Q9NQI0 724 aaKnown RBP22.09■■□□□ 1.13
CLN3-259ENST00000637551 HERC5Q9UII4 1024 aaKnown RBP22.09■■□□□ 1.13
CLN3-259ENST00000637551 NDUFB9Q9Y6M9 179 aa22.09■■□□□ 1.13
CLN3-259ENST00000637551 ZNF532Q9HCE3 1301 aa22.08■■□□□ 1.13
CLN3-259ENST00000637551 MYH1P12882 1939 aa22.08■■□□□ 1.13
CLN3-259ENST00000637551 UBE2Q2LH0YL09 131 aa22.08■■□□□ 1.13
CLN3-259ENST00000637551 MAP3K9P80192 1104 aa22.08■■□□□ 1.13
CLN3-259ENST00000637551 TCP10Q12799 353 aa22.08■■□□□ 1.13
CLN3-259ENST00000637551 METTL16Q86W50 562 aaKnown RBP22.08■■□□□ 1.13
CLN3-259ENST00000637551 SH3RF3Q8TEJ3 882 aaPredicted RBP22.08■■□□□ 1.13
CLN3-259ENST00000637551 CSADQ9Y600 493 aa22.08■■□□□ 1.13
CLN3-259ENST00000637551 FLT1P17948 1338 aa22.07■■□□□ 1.12
CLN3-259ENST00000637551 MAGEB6P1A0A0J9YX57 407 aa22.07■■□□□ 1.12
CLN3-259ENST00000637551 INHBEP58166 350 aa22.07■■□□□ 1.12
CLN3-259ENST00000637551 NOL9Q5SY16 702 aaKnown RBP22.07■■□□□ 1.12
CLN3-259ENST00000637551 CRNKL1Q9BZJ0 848 aaKnown RBP22.07■■□□□ 1.12
CLN3-259ENST00000637551 PI4KBQ9UBF8 816 aa22.07■■□□□ 1.12
CLN3-259ENST00000637551 NAV1Q8NEY1 1877 aa22.07■■□□□ 1.12
CLN3-259ENST00000637551 CDAN1Q8IWY9 1227 aa22.06■■□□□ 1.12
CLN3-259ENST00000637551 SLC10A4Q96EP9 437 aa22.06■■□□□ 1.12
CLN3-259ENST00000637551 SPRYD7Q5W111 196 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.05■■□□□ 1.12
CLN3-259ENST00000637551 MOB2Q70IA6 237 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 SH3BP5LQ7L8J4 393 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 ZSCAN29Q8IWY8 852 aaPredicted RBP22.05■■□□□ 1.12
CLN3-259ENST00000637551 EVI5LQ96CN4 794 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 EDC3Q96F86 508 aaKnown RBP22.05■■□□□ 1.12
CLN3-259ENST00000637551 LNPKQ9C0E8 428 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 EHD4Q9H223 541 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 GINM1Q9NU53 330 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 SAGE1Q9NXZ1 904 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 DOCK1Q14185 1865 aa22.05■■□□□ 1.12
CLN3-259ENST00000637551 SIPA1L1O43166 1804 aa22.04■■□□□ 1.12
CLN3-259ENST00000637551 SREBF2Q12772 1141 aa22.04■■□□□ 1.12
CLN3-259ENST00000637551 PICALMQ13492 652 aa22.04■■□□□ 1.12
CLN3-259ENST00000637551 FOXP4Q8IVH2 680 aaPredicted RBP22.04■■□□□ 1.12
CLN3-259ENST00000637551 OTUD7AQ8TE49 926 aaPredicted RBP22.04■■□□□ 1.12
CLN3-259ENST00000637551 TGFBRAP1Q8WUH2 860 aa22.04■■□□□ 1.12
CLN3-259ENST00000637551 APPBP2Q92624 585 aa22.04■■□□□ 1.12
CLN3-259ENST00000637551 WRNIP1Q96S55 665 aa22.04■■□□□ 1.12
CLN3-259ENST00000637551 ATP8A2Q9NTI2 1148 aa22.04■■□□□ 1.12
CLN3-259ENST00000637551 DDTLA6NHG4 134 aaPredicted RBP22.03■■□□□ 1.12
CLN3-259ENST00000637551 MANSC4A6NHS7 340 aaPredicted RBP22.03■■□□□ 1.12
CLN3-259ENST00000637551 SPDYE5A6NIY4 337 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 CTNND1O60716 968 aaKnown RBP22.03■■□□□ 1.12
CLN3-259ENST00000637551 HLA-DOAP06340 250 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 VGLL4Q14135 290 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 ERICH6BQ5W0A0 696 aa22.03■■□□□ 1.12
CLN3-259ENST00000637551 ERO1BQ86YB8 467 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms